Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151044g00052 ATGGGGGAGTCAAAAGTAGCAATGGCAGTATTTCGACCAAGCAACTGGGCTCTTGCACATGCTACCTTTTACGGTGATGAAACAGCTTCTGCCACCATGGGAGGAGCATGTGGGTACGGGAATTTGTTTCAAAGCGGTTACGGTACGGACACGGCGGCATTGAGCTCAAGGTTGTTCAACAATGGATATGCGTGCGGGACATGTTACCAGATAAAGTGCTACCAATCAAGTGCATGCTATAAAACCGTGGCCTACACCACAGTCACCGCCACCAATCTTTGCCCTCCAAATTGGTCAGAGCCCTCTGATGACGGTGGCTGGTGCAACCCTCCACGAGCTCATTTTGACATGTCCAAGCCAGCCTTCATGAAAATTGCCCAGTGGAAGGTCGGCATAGTCCCGGTTCTATATCGCAGAGTGCCATGCCAAAGAAAGGGAGGGCTTCGATTTGCTTTCCAAGGGAATGGTTACTGGCTATTGGTGTACGTCATGAACGTGGGAGGCGGAGGAGACATTGCCAGCATGTGGGTGAGAGGAAGCAGAACTGGATGGATTCAGATGAGCCATAACTGGGGGGCTTCCTATCAAGCCTTTGCTACTCTGGCTGGTCAATCTCTGTCCTTTAGGGTCACTTCATACACCACCAAAGAGACTATTATTGCATGGAATGTTGCTCCTTCTAATTGGCACGTTGGACTAACTTACTCCTCCACTGCCAATTTCAGATAA 729 0.4979 MGESKVAMAVFRPSNWALAHATFYGDETASATMGGACGYGNLFQSGYGTDTAALSSRLFNNGYACGTCYQIKCYQSSACYKTVAYTTVTATNLCPPNWSEPSDDGGWCNPPRAHFDMSKPAFMKIAQWKVGIVPVLYRRVPCQRKGGLRFAFQGNGYWLLVYVMNVGGGGDIASMWVRGSRTGWIQMSHNWGASYQAFATLAGQSLSFRVTSYTTKETIIAWNVAPSNWHVGLTYSSTANFR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151044g00052 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 237 IPR007117 -
Stsc151044g00052 242 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 46 60 IPR002963 GO:0009664
Stsc151044g00052 242 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Stsc151044g00052 242 CDD DPBB_EXPA_N 16 142 - -
Stsc151044g00052 242 SUPERFAMILY Barwin-like endoglucanases 8 165 IPR036908 -
Stsc151044g00052 242 SMART dpbb_1 51 137 IPR007112 -
Stsc151044g00052 242 Pfam Lytic transglycolase 51 137 IPR009009 -
Stsc151044g00052 242 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Stsc151044g00052 242 Gene3D - 148 242 IPR036749 -
Stsc151044g00052 242 PANTHER EXPANSIN-A15 12 237 IPR002963 GO:0009664
Stsc151044g00052 242 Gene3D - 3 143 IPR036908 -
Stsc151044g00052 242 SUPERFAMILY PHL pollen allergen 144 237 IPR036749 -
Stsc151044g00052 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 147 IPR007112 -
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Stsc151044g00052 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151044g00052 Stsc-Chr151044 273978 274913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151044g00052 11 242 Expansin Gene Family AT1G12560 72.845 5.99e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151044g00052 - - gmx:100807807 456.062