LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151044g00036	ATGGATCCAATTACAGCACACGGACATTCGCTTCCACCTCCATTCCACACAGCAAGAGATCTCTTGCACCACCACCAGCAACAGCAACAGCAGCAGCAGTTTCACTCCTTACAGCAGCAGCAGCAACCCACAGAAGACGAGCAAAGCGGAAGCAGCGGAGGACTCAACCTCGCTCACAAGAGGGAAAGAGAAGATAACAACAACAGCGACAGCAAAGATGGCACACCGGGTGGAGGAGGAGGAGGAGGATCCGGTGAAACAGAAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCGAAGCCACCGATCATCATCACCCGGGACAGCGCCAATGCCCTAAAGACACATGTTATGGAAGTTGCAGACGGTTGTGACATCGTCGAGAGCGTCTCCAACTTCGCAAGGAGGCGCCAAAGAGGGGTCTGCATCATGAGCGGCACCGGCACCGTCACCAACGTCACTCTCAGACAACCAGCCTCCTCTGGAGCCGTTGTCTCCCTCCATGGAAGGTTCGAGATCTTGTCCTTAGCAGGATCCTTCCTCCCTCCTCCAGCTCCCCCCGCAGCCTCCGGCTTGACCATATATCTAGCCGGAGGCCAAGGGCAGGTGGTCGGAGGGAGCGTGGTGGGGACACTGATTGCTTCGGGGCCGGTGGTGATCATGTCCGCTTCCTTCAGCAACGCTGCGTATGAAAGGCTTCCTTTGGAGGAAGAAGACCCTTCCATGCCCTTGCAAGGTACTGGCGGTGGCGGAGGCGGAGGCGGCGGGTCAATCGGGTCCCCCGGAAGTGGGCAGCAGCAGATGTTAGGGGACGCAACTGCTCCACTGTTCCATGGTTTGAATCCGAATCTTCTGAATTCAGTTCAGATGCCAACGGAGGCTTTCTGGAATACTGGTCGCTCACCTTATTGA	927	0.562	MDPITAHGHSLPPPFHTARDLLHHHQQQQQQQQFHSLQQQQQPTEDEQSGSSGGLNLAHKREREDNNNSDSKDGTPGGGGGGGSGETEMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVSLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMSASFSNAAYERLPLEEEDPSMPLQGTGGGGGGGGGSIGSPGSGQQQMLGDATAPLFHGLNPNLLNSVQMPTEAFWNTGRSPY	308

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151044g00036	308	CDD	DUF296	119	186	IPR005175	-
	Stsc151044g00036	308	ProSiteProfiles	PPC domain profile profile.	115	252	IPR005175	-
	Stsc151044g00036	308	Gene3D	-	118	246	-	-
	Stsc151044g00036	308	FunFam	AT-hook motif nuclear-localized protein	118	245	-	-
	Stsc151044g00036	308	PIRSF	ESCAROLA	19	307	IPR014476	GO:0003680
	Stsc151044g00036	308	SUPERFAMILY	AF0104/ALDC/Ptd012-like	115	244	-	-
	Stsc151044g00036	308	MobiDBLite	consensus disorder prediction	24	55	-	-
	Stsc151044g00036	308	MobiDBLite	consensus disorder prediction	1	109	-	-
	Stsc151044g00036	308	MobiDBLite	consensus disorder prediction	243	274	-	-
	Stsc151044g00036	308	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	45	302	IPR014476	GO:0003680

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151044g00036	Stsc-Chr151044	207568	209391	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151044g00036	1	308	AT-hook Motif Nuclear Localized (AHL) Family	AT4G22810	58.333	3.94e-86	259

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151044g00036	-		-	gmx:100781436	439.499

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