Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151044g00023 ATGAATTCCCTTGGTTTCCTTCTTTCATTGCTTGTGCTGGTTGCATTTCCCATTGTGCAGCTGGTTCATGGAAATGCAGAACTGAGAGCTCTTATGGACTTGAAATCCTCACTAGACCCAGAGGGAAAGATCCTTAGCTCTTGGAGCAGTGATGGTGATCCATGCAGTGGCTTGTTCCAAGGTGTTGCTTGCAACGAGAACCGGAAAGTGGCCAACATTTCCTTGCAAGGAAAGGGACTTTCAGGGTGGTTATCTCCTTCTGTAGCTGAACTTAAATGCTTGTCAGGCTTATACCTTCATTACAACAACCTTTCTGGTGAGATACCCCCACAGATTTCAAATCTTACTGATCTTGTTGATCTCTATCTCGNNNNNNNNNNCAATAGTCTCTCCGGAACCATACCTTCTGAGATCGGCAACATGGCTAGTCTCCAAGTGGTGCAGTTAGGAGACAACAAATTGGTGGGGAATATACCTAAACAGATGGGCTCTTTGAAGCAGCTTAATACTCTTGCATTGCAATATAACAAATTAAGTGGTGAAATTCCTCTAAGCTTGGGAAACTTGGAAAAGCTAAGCAGGCTGAATTTGAGCTTTAACAATTTCACTGGTATGATTCCTGCAACATTAGCTCATCTTGAACAACTCAAGTTTCTAGACATTCAAAACAATTCTCTATCAGGGATTGTTCCTTCAGCATTGAAGAGACTGGGGGATGGATTCCAAGGTGCAAACAACCAAGGTTTATGTGGAGTTGGGTTTTCTACTCTGAGAACTTGCAACAAAGATCAAGACATAAAAGTTAACCATATTGATAACTCAGACCAAGATTTTCCCAAAAATGATGATACTGCAAACGCTCTTCCAGAGCCTGCGAATGTGCAGTTGAATTGTAACCAAACTCATTGCTCGAAATCAAGGAGGTTTCCTCAGGCTGTAATCACAGCAGGTCTTGTGACAATCACTCTCACATTTTTAACCGTTGGATTTCTTACTTTTGTCAAATACCGCCGGCAAAAGCAGAGGATTAGGAATACAACGGACTCGTCTGAAGGGAAACTTAGTCCTTACCAGCCTAAAGACTTCGTCAGGAAAAGTCCATCTCCACTTGTTAACCTTGAGCATCACAATGGATGGGATCCACTGTCTAATCTATATCAAAACCAGGTCAGGTATAATGTGGATGAGGTAGAGTCTGCAACACAGTACTTCTCGGAATCCAATTTATTGAGTAAGAGCAAATTCTCAGCAGTTTATAAGGGAGTACTCAGGGATGGTTCTCTTGTGGCAATTAGAAGCATTAACTCAACATGCTGCAAAACTGAGGAAGCCGACTTTGTGAAGGGGCTGACCTTAGTAACCTCACTGAGACATGAAAATCTTGTTAGGCTCAGAGGTTTCTGCTGTTCAAGAAGTAGAGGTGAATGTTTCCTAGTCTATGACTTTGCCACCAATGGAAACCTGTCTCAATATCTTGATATGGAAGATGGAAATGGGCATGTGCTTGAATGGTCCAAGAGGGTCTCAATCATCAAGGGCATTGCAAAGGGTATTGCATATCTGCACGGTAATGAAGCAAGCAAACCTTCACTGATACATCAGAATATTTCAGTTGAAAATGTTCTCCTTGACCAACAGTTCAACCCATTGATCATGGATGCTGGGCTCCCCAAGCTTCTTGCAGATGACGTTGTTTTCTCAGCTCTGAAAGTGAGTGCTGCTATGGGGTACTTGGCCCCTGAATATGTTACTACAGGACGCTTCACTGAGAAGAGTGACATCTACGCATTTGGTGTCATTGTTCTTCAAGTTCTGTCTGGGAGGAAAACTATAGGTGGTTCGATACGGCTGGCAGTTGAATCTCTAAGATTTGATGATTTTGTTGACAGAAATCTGAGGGGAAGATATTCCAAACTTGAGGCAACAGTGCTTTCAAAGCTTGCAACACTCTGCACCCATGAGCTTCCTGACCAAAGGCCAACTATGGTGGATGTGATTCAAGAGCTGAGTGTGTTTCCTTCTCATTCATGA 2031 0.4264 MNSLGFLLSLLVLVAFPIVQLVHGNAELRALMDLKSSLDPEGKILSSWSSDGDPCSGLFQGVACNENRKVANISLQGKGLSGWLSPSVAELKCLSGLYLHYNNLSGEIPPQISNLTDLVDLYLXXXXNSLSGTIPSEIGNMASLQVVQLGDNKLVGNIPKQMGSLKQLNTLALQYNKLSGEIPLSLGNLEKLSRLNLSFNNFTGMIPATLAHLEQLKFLDIQNNSLSGIVPSALKRLGDGFQGANNQGLCGVGFSTLRTCNKDQDIKVNHIDNSDQDFPKNDDTANALPEPANVQLNCNQTHCSKSRRFPQAVITAGLVTITLTFLTVGFLTFVKYRRQKQRIRNTTDSSEGKLSPYQPKDFVRKSPSPLVNLEHHNGWDPLSNLYQNQVRYNVDEVESATQYFSESNLLSKSKFSAVYKGVLRDGSLVAIRSINSTCCKTEEADFVKGLTLVTSLRHENLVRLRGFCCSRSRGECFLVYDFATNGNLSQYLDMEDGNGHVLEWSKRVSIIKGIAKGIAYLHGNEASKPSLIHQNISVENVLLDQQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYVTTGRFTEKSDIYAFGVIVLQVLSGRKTIGGSIRLAVESLRFDDFVDRNLRGRYSKLEATVLSKLATLCTHELPDQRPTMVDVIQELSVFPSHS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151044g00023 676 Gene3D Ribonuclease Inhibitor 182 247 IPR032675 -
Stsc151044g00023 676 FunFam Protein NSP-INTERACTING KINASE 2 24 175 - -
Stsc151044g00023 676 ProSiteProfiles Protein kinase domain profile. 404 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151044g00023 676 Pfam Leucine rich repeat 191 237 IPR001611 GO:0005515
Stsc151044g00023 676 SMART LRR_typ_2 213 236 IPR003591 -
Stsc151044g00023 676 SMART LRR_typ_2 141 165 IPR003591 -
Stsc151044g00023 676 SMART LRR_typ_2 91 115 IPR003591 -
Stsc151044g00023 676 SMART LRR_typ_2 189 212 IPR003591 -
Stsc151044g00023 676 SUPERFAMILY L domain-like 27 235 - -
Stsc151044g00023 676 FunFam Protein NSP-INTERACTING KINASE 2 483 673 - -
Stsc151044g00023 676 Gene3D Phosphorylase Kinase; domain 1 370 482 - -
Stsc151044g00023 676 FunFam Protein NSP-INTERACTING KINASE 2 376 482 - -
Stsc151044g00023 676 SUPERFAMILY Protein kinase-like (PK-like) 378 670 IPR011009 -
Stsc151044g00023 676 Pfam Protein tyrosine and serine/threonine kinase 408 669 IPR001245 GO:0004672|GO:0006468
Stsc151044g00023 676 Gene3D Ribonuclease Inhibitor 24 181 IPR032675 -
Stsc151044g00023 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 127 673 IPR046959 -
Stsc151044g00023 676 Gene3D Transferase(Phosphotransferase) domain 1 483 672 - -
Stsc151044g00023 676 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151044g00023 Stsc-Chr151044 133149 135944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151044g00023 6 517 Miscellaneous Gene Families AT4G22730 55.179 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc151044g00023 PK_Tyr_Ser-Thr 9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151044g00023 - - adu:107488203 1135.94