Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151044g00021 ATGGGTCGGCAACCATGCTGTGACAAAGTTGGGGTGAAGAAAGGTCCATGGACAGCTGAAGAAGACAAGAAGCTCATAAACTTCATTGTGAGCAATGGACAGTGCTGCTGGAGAACTCTGCCTAAGCTTGCTGGCCTTAAGCGTTGTGGAAAGAGCTGCCGTCTTCGTTGGACCAATTACCTTCGCCCTGACTTGAAGAGAGGCCTCCTCACTCATTCTGAGGAGCAGCTTGTCATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATAGCTTCAAGGTTACCAGGAAGGACAGATAATGAGATTAAGAATCATTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATCGACCCTGTTACTCATCAACCTCTTGATAATAATAATAAGCAACAACTAGTTTCATCATCTTCATCTTCATCCCAATCAGCAGAGCAAAAGGAAACTGATGATAATAAAAACAACAACAATGGTGTGCCGGTTCCCATGAATTCACAGCAGGAGAACTCGTGGAGTTGGTCATCACCAATAACAACTGAAAACTCTTGTTGTGCATCAGGGGATGGGGATGAGTCCCTCTTGCTTGATGGCATTTGCAGCGATGAATCTCTAATTTTGAACAGCTTGTGGCTTGACGATACTCCACTGGTTGATGCATTATGGGACACTACACCTACATCTTGGTTATTGGACTGTCAAGACTTTGGAATTCATGACTTTGGTTTTAACTGTTTCAGTGAGACTGAGTCAAATGAACTCCAAACTCTGAAAATGGAGGACAAAACGCATTAG 804 0.4415 MGRQPCCDKVGVKKGPWTAEEDKKLINFIVSNGQCCWRTLPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTHSEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHQPLDNNNKQQLVSSSSSSSQSAEQKETDDNKNNNNGVPVPMNSQQENSWSWSSPITTENSCCASGDGDESLLLDGICSDESLILNSLWLDDTPLVDALWDTTPTSWLLDCQDFGIHDFGFNCFSETESNELQTLKMEDKTH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151044g00021 267 FunFam MYB transcription factor 70 151 - -
Stsc151044g00021 267 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc151044g00021 267 CDD SANT 16 61 IPR001005 -
Stsc151044g00021 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151044g00021 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc151044g00021 267 MobiDBLite consensus disorder prediction 123 179 - -
Stsc151044g00021 267 Gene3D - 70 161 - -
Stsc151044g00021 267 FunFam MYB transcription factor 11 67 - -
Stsc151044g00021 267 MobiDBLite consensus disorder prediction 157 179 - -
Stsc151044g00021 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151044g00021 267 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc151044g00021 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151044g00021 267 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Stsc151044g00021 267 CDD SANT 71 112 IPR001005 -
Stsc151044g00021 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc151044g00021 267 MobiDBLite consensus disorder prediction 126 149 - -
Stsc151044g00021 267 SMART sant 66 114 IPR001005 -
Stsc151044g00021 267 SMART sant 13 63 IPR001005 -
Stsc151044g00021 267 Gene3D - 12 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151044g00021 Stsc-Chr151044 123091 124465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151044g00021 1 259 MYB Transcription Factor Family AT4G12350 51.852 7.05e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151044g00021 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151044g00021 K09422 - gmx:100786965 375.17