Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151044g00016 ATGAACGCATTTTCACATGTTCCTCCTGGGTTTCGGTTCCATCCTACGGATGAAGAACTTGTTGATTACTACCTCAGAAAAAAGATAGCTTCCAAAAGGATTGATCTCGATGTCATAAAAGATGTTGATCTCTATAAGATTGAGCCATGGGATCTTCAAGAAGTGTGCAAAATAGGAAGCGAGGATGAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTACCCAACAGGGACTCGCACGAATAGAGCTACAAAGGCAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCCATATACTCAAGCTCGAGGCATTGCCTTGTTGGTATGAGAAAGACTCTTGTGTTCTACAAAGGACGAGCTCCCAATGGCCTCAAATCTGATTGGATCATGCACGAGTATCGCCTCGAGTCCAATCAAAACGCAACTCCCCAGGAAGAAGGCTGGGTTGTGTGCAGAGTCTTCAAGAAGCGAATGGCCACAGTACGCAAGATGGGAGACTATGACTCACCTTCTTGCTGGTATGATGATCAACTTCCCTTCATGCAAGGACCCCTCCTTCATCATCATGATCATCAATCTCCATCCACCCCAGTTTCTCATCATCATCACTACCCCTGCAAGCAAGAGCTTCAATTCCAATACAACAACCATGATGCTTTTCTCAACCTTCCACAACTTGAAAGCCCTAAAGTGATGAGTTGCAGCAGCCCCGTGGTTAACGTTGCACCCTATGCCTACGAAAACAACGACAATAATAATGGTGCTTTGCAGGCCTATTCATCTGAACGCATTCAGCAACAACTGCACTTGCTTTATGGTAGTAGTAATATTGATGAGCAAGGTGTGGCGGAGCAAGTCACAGATTGGAGAGTGCTTGACAAATTTGTTGCCTCTCAACTGATGAGTCAAGATCAAGATCAGGTTTCCAAGGAAACAAGCGTGGCTGATGAAGAACACATTGCTACTACTATGCTGCCAAATAATAATGGATCCAGGAAGCAGGAAATGGCGGCCCAGGAGGAGTATGTTTCAACGTCTGCCTCCAGTAACTGCGACATTCACCTCTGGAGTTAA 1080 0.4509 MNAFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQEVCKIGSEDENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSSSRHCLVGMRKTLVFYKGRAPNGLKSDWIMHEYRLESNQNATPQEEGWVVCRVFKKRMATVRKMGDYDSPSCWYDDQLPFMQGPLLHHHDHQSPSTPVSHHHHYPCKQELQFQYNNHDAFLNLPQLESPKVMSCSSPVVNVAPYAYENNDNNNGALQAYSSERIQQQLHLLYGSSNIDEQGVAEQVTDWRVLDKFVASQLMSQDQDQVSKETSVADEEHIATTMLPNNNGSRKQEMAAQEEYVSTSASSNCDIHLWS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151044g00016 359 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Stsc151044g00016 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 276 - -
Stsc151044g00016 359 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Stsc151044g00016 359 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Stsc151044g00016 359 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Stsc151044g00016 359 FunFam NAC domain-containing protein 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151044g00016 Stsc-Chr151044 93326 94600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151044g00016 1 357 NAC Transcription Factor Family AT1G62700 54.926 2.35e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151044g00016 NAM 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151044g00016 - - ahf:112800892 552.362