Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151043g00022 ATGTCCATCTTCTTGGCGATCCACCATTTGTCAAGACTCGAAAAATCAAGTCCCCGGCAACGGCACCAATGTTCCGGGGTGAATGCAGAACCTGATGAGCCCAGTCCGCTCCAAGCTTGGGCTGTTGCAATGAGTCCAATTGATGAATCTCCAATGAAACAGGCGGGAGGGGGGGAGAACCTGCAAAACACTCCGACGCTTAATGCACGTCCTAAGGTTTCGGAGTCGTGCATGAGGGCACGTCCCTATTCCGTTGCGAAGGAGAGATCGTGCCGTCCCCCATTCTTGCAGAACACGTCGGGTCGGTCCATGCACGACGGGTCGATCGTATCCGACCTCCCCTCACAAGTCGGGCACTCTGGCGGCATGTGGGCCGAATGGGTCAGCTCTGCGTTCTGTGATGCTTGGTCAAGTGGGCCTTCTGAAATAGGCCAAAGGTGGGCCTCTTCTTTGGGCTCAGGAGTCGGGTACAAACAGACACCAAAAAGAATCAAGAATAAAGGCACAAAAAAAAGGGGGGAGAAGAAGATGCGGAGGCACAGTCCAGGATACTACAGTCCGCCGAGGAGAGGCTACGGCGGCAGGGGACGATCTCCTCCACCACCACCTCCTCCCTCTAGGAGGGGCTACGGTGGTGGTGGTGGCGGCGGCGGCGGGAGGCGCGGTAGGGATAACAACAATGGAAGCCTCCTTGTTCGCAACATTCCCCTCGATTGCCGGCCCGAGGAGCTTCGTGTCCCCTTCGAGCGGTTCGGACCCGTTCGTGATGTCTACATTCCCAAGGATTATTACTCAGGAGAACCTCGAGGCTTTGCGTTTGTGCAATTTGTGGATTCTTATGATGCTTCAGAGGCACAGTACCATATGAACAGACAAATCTTTGCTGGAAGGGAAATATCTGTTGTTGTCGCAGCTGAAACAAGAAAAAGACCAGAGGAAATGCGCCAAAGGACTAGGAGAGGACCAGCGAACTATGGGGGGCGAAGGTCTTATTATGGGCGCTCTCGGTCTCGCTCAGTATCACGCTCTCCACCTTATCATGGTGGTTCTAGAGGTAGATATCGCTCAAGATCATACTCTCCTGCCCCAAGAAGGCAAAGTGATTACTCTATTTCCCCTAGAAGGCAAGCCGAACACTCTAGATCACCTCGCTCGCCAAGAGGCCCCCCTAGGGAGCGAGATGCTGATCAGAAGCGCAGATCATATACTCCAGATTTTGGCAATGGTGTTGATCCGAATGAAAGCAACGGGTATCCAGAGAAATCTACATACAAGTCTGAGGCTGATGAAGGCCAGTGGAAGTCATCTGGACGCGGACCATCGAGGTCACCACCTGGATCCAGATCTAGATCAAGGTCTCCTGATTTGTCTCCCAGACATTGA 1383 0.5351 MSIFLAIHHLSRLEKSSPRQRHQCSGVNAEPDEPSPLQAWAVAMSPIDESPMKQAGGGENLQNTPTLNARPKVSESCMRARPYSVAKERSCRPPFLQNTSGRSMHDGSIVSDLPSQVGHSGGMWAEWVSSAFCDAWSSGPSEIGQRWASSLGSGVGYKQTPKRIKNKGTKKRGEKKMRRHSPGYYSPPRRGYGGRGRSPPPPPPPSRRGYGGGGGGGGGRRGRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTRRGPANYGGRRSYYGRSRSRSVSRSPPYHGGSRGRYRSRSYSPAPRRQSDYSISPRRQAEHSRSPRSPRGPPRERDADQKRRSYTPDFGNGVDPNESNGYPEKSTYKSEADEGQWKSSGRGPSRSPPGSRSRSRSPDLSPRH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151043g00022 460 SMART rrm1_1 229 302 IPR000504 GO:0003723
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 194 208 - -
Stsc151043g00022 460 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 228 445 - -
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 14 38 - -
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 308 460 - -
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 436 452 - -
Stsc151043g00022 460 Gene3D - 222 369 IPR012677 -
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 163 178 - -
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 371 401 - -
Stsc151043g00022 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 299 IPR000504 GO:0003723
Stsc151043g00022 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Stsc151043g00022 460 MobiDBLite consensus disorder prediction 151 229 - -
Stsc151043g00022 460 SUPERFAMILY RNA-binding domain, RBD 225 335 IPR035979 GO:0003676
Stsc151043g00022 460 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 220 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151043g00022 Stsc-Chr151043 153883 158016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151043g00022 203 290 Eukaryotic Initiation Factors Gene Family AT3G11400 38.636 7.27e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151043g00022 K12900 - gmx:100804294 326.635