Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151043g00009 ATGACGTCGCATTGGTGTTACAGGTGCAACAAATTTGTGAGGGTATGGAGGCAGGACATTGTGATTTGTCCAGAATGCGATAGCGGTTTCCTTGAAGAGGTAGATCCTCACGCACGCACCCTTTATGCCGATGGTAACCGCGGGCGACGGTTGCCGGCGGCAGCCATGTACATGATAGGCCACCACCAGCGCCACCAGCGCCATAATTCCTTTGACAGTAACGCCGTCACCACCACCCCAAACGATAACAGTAATAATAATAACAACAATGTCAGTTTGTCGCGGCAAAATCAACGGCGTCACTGCCGGAACGCCAATGGCGGTGGCGGAGGAACAGGAAGTGACAGGTCGCCGATTAATCCAGTCATTATGCTCCACGGCGGAGAGCAATCCGAGGGAACCAGCAGGCGCAGGGGGTTCGAGCTCTTTTATGACGATGGAGCCGGTGCCGGCCTCCGCCCCTTGCCGCCGAGCATGTCAGAGTTTCTCCTCGGAACAGGCTTCGAAAGGGTTTTGGAGCAGTTCTCGCATTTCGAAAGGCACGATCGGCACCTCCACCAGCACAACCAGCAACCTCCTCCGGCATCAAAAACCGCCGTAGAAGGCTTGCCGGAGGTGGAGATCAATGAGAACAACCTCGCCGCAGAGCCACATTGCGCAGTTTGCAAGGAAGCCTTCGAGATCGGAGCGAAAGCTAAAGAAATGCCGTGCAAACACATATATCACTCGGAATGCATCCTGCCGTGGCTCGCTCTTCGAAACTCGTGCCCGGTTTGCCGCCACGAGTTGCCCACGGAAGAAAACAATAACGGTCACGTGCAGAACACTGCCAGCAACGACAGCGCACGTGCGGATCAAGAAGGTAACAATAATAACAACAGCAATAACAGTAATGATAACAGAAATAACAACAACGTGGGGCTAACAATATGGCGGTTACCGGGTGGCGGTTTCGCGGTTGGGAGACTAACCGGCGGTGGTGCAGGAAGAGGAGGATCGACAGAGAGGGAAAATGTTCTTCCTGCTGTGTACACAGAAATGGATGGAGGAGGGTTTGATAGTAATAACAACAATAATAATAATATTGGCGGTGGTGAGAGGAGGAGGGTTACTTGGACAGTTTCAACTAGTACTTCAAGAGAGAGAGAAAGTGGTGGTGGGTTGAGGAGAATGGTGAGCAGTTTCTTTGGTTGCTTCAGACGTGGGAATAATGGTGTGATTCATCATCATCATCATCATCTTCATCACTCTTCTTCATCTTCTTCTTCTTCTCCTTCTTCACGGCATGGTGATTATTTTAGGCAGTATTCATCATCATCACCTTCAAGAAATAGAAATAGAGCTATGAGTAGTGGCACATCACGTTCCGCTGTCAATTTCGAATTGGATCGCTCCCCATTACGTCAACGCAGGACTTGGTCTATGGATGTAAACAGTGGCGGCGGTTCCAGACCTGCTTGGTGA 1464 0.5089 MTSHWCYRCNKFVRVWRQDIVICPECDSGFLEEVDPHARTLYADGNRGRRLPAAAMYMIGHHQRHQRHNSFDSNAVTTTPNDNSNNNNNNVSLSRQNQRRHCRNANGGGGGTGSDRSPINPVIMLHGGEQSEGTSRRRGFELFYDDGAGAGLRPLPPSMSEFLLGTGFERVLEQFSHFERHDRHLHQHNQQPPPASKTAVEGLPEVEINENNLAAEPHCAVCKEAFEIGAKAKEMPCKHIYHSECILPWLALRNSCPVCRHELPTEENNNGHVQNTASNDSARADQEGNNNNNSNNSNDNRNNNNVGLTIWRLPGGGFAVGRLTGGGAGRGGSTERENVLPAVYTEMDGGGFDSNNNNNNNIGGGERRRVTWTVSTSTSRERESGGGLRRMVSSFFGCFRRGNNGVIHHHHHHLHHSSSSSSSSPSSRHGDYFRQYSSSSPSRNRNRAMSSGTSRSAVNFELDRSPLRQRRTWSMDVNSGGGSRPAW 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151043g00009 487 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Stsc151043g00009 487 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 65 264 - -
Stsc151043g00009 487 CDD RING-H2_RNF126-like 219 260 - -
Stsc151043g00009 487 SMART ring_2 219 259 IPR001841 -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 62 120 - -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 418 460 - -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 350 370 - -
Stsc151043g00009 487 FunFam E3 ubiquitin-protein ligase RING1-like 182 266 - -
Stsc151043g00009 487 SUPERFAMILY RING/U-box 200 266 - -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 264 307 - -
Stsc151043g00009 487 Pfam zinc-ribbon 2 33 IPR039525 GO:0061630
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 70 103 - -
Stsc151043g00009 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 266 IPR013083 -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 410 463 - -
Stsc151043g00009 487 MobiDBLite consensus disorder prediction 268 307 - -
Stsc151043g00009 487 Pfam Ring finger domain 218 260 IPR001841 -
Stsc151043g00009 487 Pfam Protein of unknown function (DUF1117) 306 430 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151043g00009 Stsc-Chr151043 29966 31429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151043g00009 193 267 C3H Transcription Factor Family AT5G15820 55.263 2.79e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151043g00009 K11982 - gmx:100784364 338.576