Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151043g00009 | ATGACGTCGCATTGGTGTTACAGGTGCAACAAATTTGTGAGGGTATGGAGGCAGGACATTGTGATTTGTCCAGAATGCGATAGCGGTTTCCTTGAAGAGGTAGATCCTCACGCACGCACCCTTTATGCCGATGGTAACCGCGGGCGACGGTTGCCGGCGGCAGCCATGTACATGATAGGCCACCACCAGCGCCACCAGCGCCATAATTCCTTTGACAGTAACGCCGTCACCACCACCCCAAACGATAACAGTAATAATAATAACAACAATGTCAGTTTGTCGCGGCAAAATCAACGGCGTCACTGCCGGAACGCCAATGGCGGTGGCGGAGGAACAGGAAGTGACAGGTCGCCGATTAATCCAGTCATTATGCTCCACGGCGGAGAGCAATCCGAGGGAACCAGCAGGCGCAGGGGGTTCGAGCTCTTTTATGACGATGGAGCCGGTGCCGGCCTCCGCCCCTTGCCGCCGAGCATGTCAGAGTTTCTCCTCGGAACAGGCTTCGAAAGGGTTTTGGAGCAGTTCTCGCATTTCGAAAGGCACGATCGGCACCTCCACCAGCACAACCAGCAACCTCCTCCGGCATCAAAAACCGCCGTAGAAGGCTTGCCGGAGGTGGAGATCAATGAGAACAACCTCGCCGCAGAGCCACATTGCGCAGTTTGCAAGGAAGCCTTCGAGATCGGAGCGAAAGCTAAAGAAATGCCGTGCAAACACATATATCACTCGGAATGCATCCTGCCGTGGCTCGCTCTTCGAAACTCGTGCCCGGTTTGCCGCCACGAGTTGCCCACGGAAGAAAACAATAACGGTCACGTGCAGAACACTGCCAGCAACGACAGCGCACGTGCGGATCAAGAAGGTAACAATAATAACAACAGCAATAACAGTAATGATAACAGAAATAACAACAACGTGGGGCTAACAATATGGCGGTTACCGGGTGGCGGTTTCGCGGTTGGGAGACTAACCGGCGGTGGTGCAGGAAGAGGAGGATCGACAGAGAGGGAAAATGTTCTTCCTGCTGTGTACACAGAAATGGATGGAGGAGGGTTTGATAGTAATAACAACAATAATAATAATATTGGCGGTGGTGAGAGGAGGAGGGTTACTTGGACAGTTTCAACTAGTACTTCAAGAGAGAGAGAAAGTGGTGGTGGGTTGAGGAGAATGGTGAGCAGTTTCTTTGGTTGCTTCAGACGTGGGAATAATGGTGTGATTCATCATCATCATCATCATCTTCATCACTCTTCTTCATCTTCTTCTTCTTCTCCTTCTTCACGGCATGGTGATTATTTTAGGCAGTATTCATCATCATCACCTTCAAGAAATAGAAATAGAGCTATGAGTAGTGGCACATCACGTTCCGCTGTCAATTTCGAATTGGATCGCTCCCCATTACGTCAACGCAGGACTTGGTCTATGGATGTAAACAGTGGCGGCGGTTCCAGACCTGCTTGGTGA | 1464 | 0.5089 | MTSHWCYRCNKFVRVWRQDIVICPECDSGFLEEVDPHARTLYADGNRGRRLPAAAMYMIGHHQRHQRHNSFDSNAVTTTPNDNSNNNNNNVSLSRQNQRRHCRNANGGGGGTGSDRSPINPVIMLHGGEQSEGTSRRRGFELFYDDGAGAGLRPLPPSMSEFLLGTGFERVLEQFSHFERHDRHLHQHNQQPPPASKTAVEGLPEVEINENNLAAEPHCAVCKEAFEIGAKAKEMPCKHIYHSECILPWLALRNSCPVCRHELPTEENNNGHVQNTASNDSARADQEGNNNNNSNNSNDNRNNNNVGLTIWRLPGGGFAVGRLTGGGAGRGGSTERENVLPAVYTEMDGGGFDSNNNNNNNIGGGERRRVTWTVSTSTSRERESGGGLRRMVSSFFGCFRRGNNGVIHHHHHHLHHSSSSSSSSPSSRHGDYFRQYSSSSPSRNRNRAMSSGTSRSAVNFELDRSPLRQRRTWSMDVNSGGGSRPAW | 487 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151043g00009 | 487 | ProSiteProfiles | Zinc finger RING-type profile. | 219 | 260 | IPR001841 | - | |
Stsc151043g00009 | 487 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 65 | 264 | - | - | |
Stsc151043g00009 | 487 | CDD | RING-H2_RNF126-like | 219 | 260 | - | - | |
Stsc151043g00009 | 487 | SMART | ring_2 | 219 | 259 | IPR001841 | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 62 | 120 | - | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 418 | 460 | - | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 350 | 370 | - | - | |
Stsc151043g00009 | 487 | FunFam | E3 ubiquitin-protein ligase RING1-like | 182 | 266 | - | - | |
Stsc151043g00009 | 487 | SUPERFAMILY | RING/U-box | 200 | 266 | - | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 264 | 307 | - | - | |
Stsc151043g00009 | 487 | Pfam | zinc-ribbon | 2 | 33 | IPR039525 | GO:0061630 | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 70 | 103 | - | - | |
Stsc151043g00009 | 487 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 266 | IPR013083 | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 410 | 463 | - | - | |
Stsc151043g00009 | 487 | MobiDBLite | consensus disorder prediction | 268 | 307 | - | - | |
Stsc151043g00009 | 487 | Pfam | Ring finger domain | 218 | 260 | IPR001841 | - | |
Stsc151043g00009 | 487 | Pfam | Protein of unknown function (DUF1117) | 306 | 430 | IPR010543 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151043g00009 | Stsc-Chr151043 | 29966 | 31429 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151043g00009 | 193 | 267 | C3H Transcription Factor Family | AT5G15820 | 55.263 | 2.79e-25 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151043g00009 | K11982 | - | gmx:100784364 | 338.576 |