Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151043g00003 | ATGCCACGGAGTCAGATCCTAGGTCACAGTAACCATTTCAACGCTGCAGCATACGATAATGAGAGAGAACCAAACAAGAGGAAAATAGAAATAGCTGCAAACTTCTTGAATTTGGAGAAGAGATCTTTTTCTGTGTTCGTTGACAACTTTTCTCAACGAATGACACTACACTGGCTATGGGAGATTTTCACTAAAGAAGGACATGTGGTTGATGTGTACTTGTCAAGGAAAATCAGAAAGAACTCTATTTTAAGATTTGCATTCGTGAGATACCAATTCAAAAACCATGCACAAAGAGCAATAGACAACCTAAATGGTTTGAATATTGACAACATTCCGATAAGCGTAGCCGAAGCAAAAAAGAAAAAGGAGAAAAAGAAGGGAGCGGAGGAAACATGGGAAAGAAACGTGAAAGAGAAATCCTTCAAAAGTGTACTGATGGGAGAGGTGGGAGATGAGCAGGATATAAGCCATGAAGAGGGTCCAGAAAGAAACAGCCAGTCAAGTATGGGGGAAATTATGGGAGAGGTGGATCGAGGTTGGATGGAGAAACTGCAGAAGAGTTCAATCGATGAATCTTCCTTTCTTCTAGATCTTGAAGATCTAAGAGAAAACCTTTTTCATGATTGGGACGCGTTAAGGGAGGTGAAAGGAATTGGTCGCTTCAAAGCGCTCATGGTTTTTGAATCTGTGGAGAGCAGAGATGAAGCGATGCAATCTTATTTCCTCTTAAATCGTTTTGCTGAAGTCCGAGAGTGTCAAGTGCAAGACATGAGCAACTCAAGAAGAACATGGATAGAAATCTATGGCATGCCTTTACATGGGTGGAATGAAGATAACCTCAGAAAGATTGCAGAACTCTCGGGGGTAGTAGTGAGGTTTGATGCCTGCTCTATGTATGGAGACGAGTTGACAGCAGTTAGAGCCCTGATAGACACACCCTGA | 945 | 0.419 | MPRSQILGHSNHFNAAAYDNEREPNKRKIEIAANFLNLEKRSFSVFVDNFSQRMTLHWLWEIFTKEGHVVDVYLSRKIRKNSILRFAFVRYQFKNHAQRAIDNLNGLNIDNIPISVAEAKKKKEKKKGAEETWERNVKEKSFKSVLMGEVGDEQDISHEEGPERNSQSSMGEIMGEVDRGWMEKLQKSSIDESSFLLDLEDLRENLFHDWDALREVKGIGRFKALMVFESVESRDEAMQSYFLLNRFAEVRECQVQDMSNSRRTWIEIYGMPLHGWNEDNLRKIAELSGVVVRFDACSMYGDELTAVRALIDTP | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151043g00003 | 314 | CDD | RRM_SF | 45 | 116 | - | - | |
Stsc151043g00003 | 314 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 34 | 168 | - | - | |
Stsc151043g00003 | 314 | SMART | rrm1_1 | 44 | 117 | IPR000504 | GO:0003723 | |
Stsc151043g00003 | 314 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 45 | 112 | IPR000504 | GO:0003723 | |
Stsc151043g00003 | 314 | Pfam | Domain of unknown function (DUF4283) | 238 | 311 | IPR025558 | - | |
Stsc151043g00003 | 314 | SUPERFAMILY | RNA-binding domain, RBD | 41 | 125 | IPR035979 | GO:0003676 | |
Stsc151043g00003 | 314 | Coils | Coil | 116 | 136 | - | - | |
Stsc151043g00003 | 314 | Gene3D | - | 36 | 145 | IPR012677 | - | |
Stsc151043g00003 | 314 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 43 | 121 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151043g00003 | Stsc-Chr151043 | 5086 | 6103 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151043g00003 | 21 | 144 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.226 | 4.10e-06 | 46.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151043g00003 | K12891 | - | ahf:112794598 | 84.3445 |