Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151043g00003 ATGCCACGGAGTCAGATCCTAGGTCACAGTAACCATTTCAACGCTGCAGCATACGATAATGAGAGAGAACCAAACAAGAGGAAAATAGAAATAGCTGCAAACTTCTTGAATTTGGAGAAGAGATCTTTTTCTGTGTTCGTTGACAACTTTTCTCAACGAATGACACTACACTGGCTATGGGAGATTTTCACTAAAGAAGGACATGTGGTTGATGTGTACTTGTCAAGGAAAATCAGAAAGAACTCTATTTTAAGATTTGCATTCGTGAGATACCAATTCAAAAACCATGCACAAAGAGCAATAGACAACCTAAATGGTTTGAATATTGACAACATTCCGATAAGCGTAGCCGAAGCAAAAAAGAAAAAGGAGAAAAAGAAGGGAGCGGAGGAAACATGGGAAAGAAACGTGAAAGAGAAATCCTTCAAAAGTGTACTGATGGGAGAGGTGGGAGATGAGCAGGATATAAGCCATGAAGAGGGTCCAGAAAGAAACAGCCAGTCAAGTATGGGGGAAATTATGGGAGAGGTGGATCGAGGTTGGATGGAGAAACTGCAGAAGAGTTCAATCGATGAATCTTCCTTTCTTCTAGATCTTGAAGATCTAAGAGAAAACCTTTTTCATGATTGGGACGCGTTAAGGGAGGTGAAAGGAATTGGTCGCTTCAAAGCGCTCATGGTTTTTGAATCTGTGGAGAGCAGAGATGAAGCGATGCAATCTTATTTCCTCTTAAATCGTTTTGCTGAAGTCCGAGAGTGTCAAGTGCAAGACATGAGCAACTCAAGAAGAACATGGATAGAAATCTATGGCATGCCTTTACATGGGTGGAATGAAGATAACCTCAGAAAGATTGCAGAACTCTCGGGGGTAGTAGTGAGGTTTGATGCCTGCTCTATGTATGGAGACGAGTTGACAGCAGTTAGAGCCCTGATAGACACACCCTGA 945 0.419 MPRSQILGHSNHFNAAAYDNEREPNKRKIEIAANFLNLEKRSFSVFVDNFSQRMTLHWLWEIFTKEGHVVDVYLSRKIRKNSILRFAFVRYQFKNHAQRAIDNLNGLNIDNIPISVAEAKKKKEKKKGAEETWERNVKEKSFKSVLMGEVGDEQDISHEEGPERNSQSSMGEIMGEVDRGWMEKLQKSSIDESSFLLDLEDLRENLFHDWDALREVKGIGRFKALMVFESVESRDEAMQSYFLLNRFAEVRECQVQDMSNSRRTWIEIYGMPLHGWNEDNLRKIAELSGVVVRFDACSMYGDELTAVRALIDTP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151043g00003 314 CDD RRM_SF 45 116 - -
Stsc151043g00003 314 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 34 168 - -
Stsc151043g00003 314 SMART rrm1_1 44 117 IPR000504 GO:0003723
Stsc151043g00003 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 112 IPR000504 GO:0003723
Stsc151043g00003 314 Pfam Domain of unknown function (DUF4283) 238 311 IPR025558 -
Stsc151043g00003 314 SUPERFAMILY RNA-binding domain, RBD 41 125 IPR035979 GO:0003676
Stsc151043g00003 314 Coils Coil 116 136 - -
Stsc151043g00003 314 Gene3D - 36 145 IPR012677 -
Stsc151043g00003 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151043g00003 Stsc-Chr151043 5086 6103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151043g00003 21 144 Eukaryotic Initiation Factors Gene Family AT1G49760 28.226 4.10e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151043g00003 K12891 - ahf:112794598 84.3445