Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151042g00021 ATGGAACACACTGAACCCGATTCTGCTTCTTCTTCGCTTCCCAATGGCGGTGGTGACTCCATCATCGCCACCCAGCAAGACCCTCAGCTTGCTGCTTCTTCCAATCACTGCACCGACGATCTTCAGCCGTCAGATCTCCATCAAACGGCTCAGGATGGTTCGCTCTCTGATGAGCTTCAGAGTAAGCTCGATTTGAAGGGCTTGGAAGAGGGTGGCGAGATTGGGGATAAAGCTTCAAACTTTGTCCAAGTTGATGATGGGGGTGTTACTAATGGTGATGATGGCGGTGATGAGGGTTTTAAAGGTGGTGGTGGTGGTAATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGAGGGTGTTGTGGATGCTGATTATGATGGGGTAGTTGGTGGCTATGATGATGCTAATGGGGATGATGATGATGATGATGATGTTGATGGAGTTGAAAAGAGGGAAGAGAGAAGTGGTGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCCGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGGATCAATTGCAAGTTCAATCACCCCATTAATAGGAGGAAAACCCAGGCTGCTAAGGAGCGATCAGCAGAAAGAGAAGAAGAACAAGCAGAAAGACCAGGACAGACTGAATGCAAGTTTTATCTAAGGTCTGGTGGTTGTAAATTTGGAAAAGATTGTAAATATAACCACGCAAAAGTGAAAGACTCAACAGAAGAGGCAGAACTCAATTTTCTTGGCCTGCCTATTCGTTCGGGAAAGAGAGAATGTCCTTATTACATGCGCACTGGCTCGTGTAAGTTTGGAGCGAACTGCAAGTTTAATCATCCCGATCCTACAACCATTGGAGGTTCTAATCCGTCTTCAGGGTATAGTAATGGACGATCTGATCCTTCTTCAGGGTATAGTAATGGCCGATCTAATCCTTCTTCAGGGTATAGTAATGGGGGATCTATTTCATTGCATGGTGTATCACAACAGTCTGTGTCGACATGGTCTTCTCCAAGAACAGTAAATGAAACTTCTCCTTTTGTGCCAATGATGCTTTCACCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCAGAGAGGAGTATGCATCCGCCTCCGTCATATGTCATGAACAACCCAGTGATCGAAACAAATGTTTATATACACCCGCAAAAGCGAATTCAAGGTGATGAGTTTCCTGAAAGACCGGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAGTTTCACCATCCAAAGAATCGGCTTGCAACATTACCTTCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAGTGCCTGCGTGCATTACACAAGATACGGACTGTGCAAGTTTGGACCGGCTTGTAAGTATGACCACCCGATAAACCCGGTGCCCCCACCCGGTGTTGAGGTTGATGATGGGATGGGTGGAAATGGAGGTGGTGGTGATCCCACAATTCAGCAAGTTGTGTAA 1572 0.465 MEHTEPDSASSSLPNGGGDSIIATQQDPQLAASSNHCTDDLQPSDLHQTAQDGSLSDELQSKLDLKGLEEGGEIGDKASNFVQVDDGGVTNGDDGGDEGFKGGGGGNGDNWGWETNSWEEENVNEGVVDADYDGVVGGYDDANGDDDDDDDVDGVEKREERSGGGGRAQHQYPWRPDAPDCAFYMKTGNCKFGINCKFNHPINRRKTQAAKERSAEREEEQAERPGQTECKFYLRSGGCKFGKDCKYNHAKVKDSTEEAELNFLGLPIRSGKRECPYYMRTGSCKFGANCKFNHPDPTTIGGSNPSSGYSNGRSDPSSGYSNGRSNPSSGYSNGGSISLHGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPSYVMNNPVIETNVYIHPQKRIQGDEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRLATLPSCNLNDKGLPLRPDKSACVHYTRYGLCKFGPACKYDHPINPVPPPGVEVDDGMGGNGGGGDPTIQQVV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151042g00021 523 SUPERFAMILY CCCH zinc finger 175 204 IPR036855 GO:0046872
Stsc151042g00021 523 ProSiteProfiles Zinc finger C3H1-type profile. 467 495 IPR000571 GO:0046872
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 504 523 - -
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 1 116 - -
Stsc151042g00021 523 SUPERFAMILY CCCH zinc finger 272 296 IPR036855 GO:0046872
Stsc151042g00021 523 Gene3D - 149 212 - -
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 298 355 - -
Stsc151042g00021 523 Gene3D - 423 498 - -
Stsc151042g00021 523 PANTHER PROTEIN PHOSPHATASE RELATED 29 495 - -
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 140 154 - -
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 135 173 - -
Stsc151042g00021 523 SUPERFAMILY CCCH zinc finger 230 259 IPR036855 GO:0046872
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 7 58 - -
Stsc151042g00021 523 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872
Stsc151042g00021 523 ProSiteProfiles Zinc finger C3H1-type profile. 421 449 IPR000571 GO:0046872
Stsc151042g00021 523 SUPERFAMILY CCCH zinc finger 469 496 IPR036855 GO:0046872
Stsc151042g00021 523 Gene3D - 213 300 - -
Stsc151042g00021 523 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Stsc151042g00021 523 SMART c3hfinal6 421 448 IPR000571 GO:0046872
Stsc151042g00021 523 SMART c3hfinal6 468 494 IPR000571 GO:0046872
Stsc151042g00021 523 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Stsc151042g00021 523 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Stsc151042g00021 523 SMART c3hfinal6 175 202 IPR000571 GO:0046872
Stsc151042g00021 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 470 493 IPR000571 GO:0046872
Stsc151042g00021 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 295 IPR000571 GO:0046872
Stsc151042g00021 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 249 IPR000571 GO:0046872
Stsc151042g00021 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 201 IPR000571 GO:0046872
Stsc151042g00021 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 448 IPR000571 GO:0046872
Stsc151042g00021 523 SUPERFAMILY CCCH zinc finger 426 451 IPR036855 GO:0046872
Stsc151042g00021 523 MobiDBLite consensus disorder prediction 207 226 - -
Stsc151042g00021 523 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151042g00021 Stsc-Chr151042 167480 171662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151042g00021 412 519 C2H2 Transcription Factor Family AT5G18550 40.000 1.88e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151042g00021 zf-CCCH 1.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151042g00021 - - adu:107491206 740.339