Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151042g00020 ATGGGAAATCTCCAAACAAAATGGGCAGGGACTGAAACCCAACCCTCTCAATCCAATTCACCCCCTCCTTCTTCCCTTCCCAATACCAGACTGGCCCCTCTTTCTTCCCCTCCCTCTCATCACCATCAAACTTCTTCTTCTTCTTCGCTTGCCAATGGCAGTGGTCAACAACACCCACAGCCACCATTGACCCCTCTTTCTTCCCATCTTTCTGATCGCAATCAAACGCCCCAGGAAGGTGCCCTCTGCGGGGATCTTCAGGGGAAACTAGAATTGAAGGATGAAGGTGGAGTGGGTGTTGAATCTCTGGATAAAGTTTCAATCTTTGGTGAAAAGGGTGCTAATGGTGAAGGTGTTGAAGTTGATGATCATCGGGATATTGAGGGATGGGAGAGCAACAGTTGGGAAGATGATTGTGTGAGGGCGAGGGTGAGGGTGAGTGTTAATGATGGTGATGGTGATGGTGATGGCGTTGGAGCTGAGAAGAGAAAAAAGAGAAGCCAGTACCCTAAGAAGCCTGAAGCTCCGGATTGTGTATTCTATATGAAGGGGACATGCAAATTCGGATCAAATTGCAAGTTTAATCACTCCAGTGACATGAAAGCTAAGGTTGCTAAGCAGCAGTCCCGGGAAAGAGAAGAACCCGCAGAAAGATCAGGCCAAACAGAATGCAAGTATTATTCAACACTACCGGCTGCAGAACTGAACTTTCTTGACCTGCCTATCCGTCCAGGAGAGAAAGATTGTCCCTATTACATGCAACATGGCTCTTGTAAGTTTGGAGGGGACTGCATGTATAATCATCCTGACCCTACAGTTGAAGGATTTGATCCTCCTTCTCCAGCAAGAGTAAACGATACATCTTCTTTTGTGCCCATGATGCTTTCGCCTGCTCAAGTTTCTTCCCAAGGTTCTTATTGGAATGCATATCAGGAACCTATCTACCCATCTGTGGTGAGTATGCACCCACCTACGCATATCATGAACAACCCAGCAATCAATACAAACACTTCACCCCATCAACAGCGGATGCAAGTTGGAGTTGATGAGTTTGCAGAAATACCTGAGGATTCCAAGTCTAAATCCAAACGTAAGAAGAATAAGCTTGCAAGTTTACCTCCATCCAATCTAAATGACAAGAGCCTGCCTTTGGGACCTGCTGTTGGTTCATCATCAGCATTGTCTTCAAGTTTGCCTTTGACTCATGAGGCGGCGACATTGTTGCCTAACCAAACCAAAGGCTCCAGATCAATGAGATGTGAAGTGTGCAAAATCAACTGTAATAGCAAAGATGTTTATGAAAAGCACATATCTGGAAAGAAACATTTGAAGAATATGGAGATAAATGCTAATACCATGCTAGCGAATGGTGGCAATAATGTAGGCAACATTGTGCGTAATAGCCAAGATGTGTATAACAAACATATAGCCGGGAAAAAGCATGTGGCTCAGGTTGCTTTGATGTCTAACAACGGTATTGGTCCTTGGAATAAAGCACCAAAGAAGATCAAGGTTATGCAACCAGTATGGTGTGACACTTGCAAGATTACTTGTAATAACAGGGATATGTATGCTTCACACTTAGTGGGGAAGAAACATCTCAACAACTTGGAGAAACAGTCAAAACCTGAAGCCAACGCAAATGCCGGGAAACTGTTAATTGGGCCCCAGGAAAAGCCGAATGCTGATAAACCAAAATCAAACAAGGCTAAGGACTTGGATATCGAGGCGAAGAAGCTCAAGGTTGTAGAAGGTGGTACTGCTGCAGATTCTGTTAGAATGTGCACTCTTTGTAATGTAGTATGCAACAGCGAGACCGTTTTCAATGCTCACCTTGCTGGCCATAAACATGCATCTATGGTGAAGGAGCAAACTTTGGAGTCTAGTGGGACAACTGCTAGCTGA 1905 0.4472 MGNLQTKWAGTETQPSQSNSPPPSSLPNTRLAPLSSPPSHHHQTSSSSSLANGSGQQHPQPPLTPLSSHLSDRNQTPQEGALCGDLQGKLELKDEGGVGVESLDKVSIFGEKGANGEGVEVDDHRDIEGWESNSWEDDCVRARVRVSVNDGDGDGDGVGAEKRKKRSQYPKKPEAPDCVFYMKGTCKFGSNCKFNHSSDMKAKVAKQQSREREEPAERSGQTECKYYSTLPAAELNFLDLPIRPGEKDCPYYMQHGSCKFGGDCMYNHPDPTVEGFDPPSPARVNDTSSFVPMMLSPAQVSSQGSYWNAYQEPIYPSVVSMHPPTHIMNNPAINTNTSPHQQRMQVGVDEFAEIPEDSKSKSKRKKNKLASLPPSNLNDKSLPLGPAVGSSSALSSSLPLTHEAATLLPNQTKGSRSMRCEVCKINCNSKDVYEKHISGKKHLKNMEINANTMLANGGNNVGNIVRNSQDVYNKHIAGKKHVAQVALMSNNGIGPWNKAPKKIKVMQPVWCDTCKITCNNRDMYASHLVGKKHLNNLEKQSKPEANANAGKLLIGPQEKPNADKPKSNKAKDLDIEAKKLKVVEGGTAADSVRMCTLCNVVCNSETVFNAHLAGHKHASMVKEQTLESSGTTAS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151042g00020 634 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Stsc151042g00020 634 ProSiteProfiles Zinc finger C3H1-type profile. 172 199 IPR000571 GO:0046872
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 552 571 - -
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 146 172 - -
Stsc151042g00020 634 PANTHER PROTEIN PHOSPHATASE RELATED 231 386 - -
Stsc151042g00020 634 SUPERFAMILY CCCH zinc finger 246 271 IPR036855 GO:0046872
Stsc151042g00020 634 Gene3D Classic Zinc Finger 403 448 - -
Stsc151042g00020 634 Gene3D Classic Zinc Finger 569 625 - -
Stsc151042g00020 634 SUPERFAMILY beta-beta-alpha zinc fingers 590 625 IPR036236 -
Stsc151042g00020 634 Gene3D Classic Zinc Finger 498 544 - -
Stsc151042g00020 634 SMART ZnF_U1_5 506 540 IPR003604 GO:0003676|GO:0008270
Stsc151042g00020 634 SMART ZnF_U1_5 590 624 IPR003604 GO:0003676|GO:0008270
Stsc151042g00020 634 SMART ZnF_U1_5 415 449 IPR003604 GO:0003676|GO:0008270
Stsc151042g00020 634 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Stsc151042g00020 634 SMART c3hfinal6 172 198 IPR000571 GO:0046872
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 1 19 - -
Stsc151042g00020 634 SUPERFAMILY beta-beta-alpha zinc fingers 505 540 IPR036236 -
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 1 88 - -
Stsc151042g00020 634 Pfam Zinc-finger of C2H2 type 420 442 - -
Stsc151042g00020 634 Pfam Zinc-finger of C2H2 type 510 533 - -
Stsc151042g00020 634 Pfam Zinc-finger of C2H2 type 595 617 - -
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 29 81 - -
Stsc151042g00020 634 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 269 IPR000571 GO:0046872
Stsc151042g00020 634 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 197 IPR000571 GO:0046872
Stsc151042g00020 634 SMART c2h2final6 509 533 IPR013087 -
Stsc151042g00020 634 SMART c2h2final6 593 615 IPR013087 -
Stsc151042g00020 634 SMART c2h2final6 418 442 IPR013087 -
Stsc151042g00020 634 Gene3D - 132 209 - -
Stsc151042g00020 634 Gene3D - 224 275 - -
Stsc151042g00020 634 SUPERFAMILY CCCH zinc finger 175 199 IPR036855 GO:0046872
Stsc151042g00020 634 SUPERFAMILY beta-beta-alpha zinc fingers 405 447 IPR036236 -
Stsc151042g00020 634 MobiDBLite consensus disorder prediction 355 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151042g00020 Stsc-Chr151042 152926 156994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151042g00020 169 310 C2H2 Transcription Factor Family AT3G02830 33.520 1.74e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151042g00020 zf-CCCH 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151042g00020 - - adu:107463587 381.333