Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151042g00020 | ATGGGAAATCTCCAAACAAAATGGGCAGGGACTGAAACCCAACCCTCTCAATCCAATTCACCCCCTCCTTCTTCCCTTCCCAATACCAGACTGGCCCCTCTTTCTTCCCCTCCCTCTCATCACCATCAAACTTCTTCTTCTTCTTCGCTTGCCAATGGCAGTGGTCAACAACACCCACAGCCACCATTGACCCCTCTTTCTTCCCATCTTTCTGATCGCAATCAAACGCCCCAGGAAGGTGCCCTCTGCGGGGATCTTCAGGGGAAACTAGAATTGAAGGATGAAGGTGGAGTGGGTGTTGAATCTCTGGATAAAGTTTCAATCTTTGGTGAAAAGGGTGCTAATGGTGAAGGTGTTGAAGTTGATGATCATCGGGATATTGAGGGATGGGAGAGCAACAGTTGGGAAGATGATTGTGTGAGGGCGAGGGTGAGGGTGAGTGTTAATGATGGTGATGGTGATGGTGATGGCGTTGGAGCTGAGAAGAGAAAAAAGAGAAGCCAGTACCCTAAGAAGCCTGAAGCTCCGGATTGTGTATTCTATATGAAGGGGACATGCAAATTCGGATCAAATTGCAAGTTTAATCACTCCAGTGACATGAAAGCTAAGGTTGCTAAGCAGCAGTCCCGGGAAAGAGAAGAACCCGCAGAAAGATCAGGCCAAACAGAATGCAAGTATTATTCAACACTACCGGCTGCAGAACTGAACTTTCTTGACCTGCCTATCCGTCCAGGAGAGAAAGATTGTCCCTATTACATGCAACATGGCTCTTGTAAGTTTGGAGGGGACTGCATGTATAATCATCCTGACCCTACAGTTGAAGGATTTGATCCTCCTTCTCCAGCAAGAGTAAACGATACATCTTCTTTTGTGCCCATGATGCTTTCGCCTGCTCAAGTTTCTTCCCAAGGTTCTTATTGGAATGCATATCAGGAACCTATCTACCCATCTGTGGTGAGTATGCACCCACCTACGCATATCATGAACAACCCAGCAATCAATACAAACACTTCACCCCATCAACAGCGGATGCAAGTTGGAGTTGATGAGTTTGCAGAAATACCTGAGGATTCCAAGTCTAAATCCAAACGTAAGAAGAATAAGCTTGCAAGTTTACCTCCATCCAATCTAAATGACAAGAGCCTGCCTTTGGGACCTGCTGTTGGTTCATCATCAGCATTGTCTTCAAGTTTGCCTTTGACTCATGAGGCGGCGACATTGTTGCCTAACCAAACCAAAGGCTCCAGATCAATGAGATGTGAAGTGTGCAAAATCAACTGTAATAGCAAAGATGTTTATGAAAAGCACATATCTGGAAAGAAACATTTGAAGAATATGGAGATAAATGCTAATACCATGCTAGCGAATGGTGGCAATAATGTAGGCAACATTGTGCGTAATAGCCAAGATGTGTATAACAAACATATAGCCGGGAAAAAGCATGTGGCTCAGGTTGCTTTGATGTCTAACAACGGTATTGGTCCTTGGAATAAAGCACCAAAGAAGATCAAGGTTATGCAACCAGTATGGTGTGACACTTGCAAGATTACTTGTAATAACAGGGATATGTATGCTTCACACTTAGTGGGGAAGAAACATCTCAACAACTTGGAGAAACAGTCAAAACCTGAAGCCAACGCAAATGCCGGGAAACTGTTAATTGGGCCCCAGGAAAAGCCGAATGCTGATAAACCAAAATCAAACAAGGCTAAGGACTTGGATATCGAGGCGAAGAAGCTCAAGGTTGTAGAAGGTGGTACTGCTGCAGATTCTGTTAGAATGTGCACTCTTTGTAATGTAGTATGCAACAGCGAGACCGTTTTCAATGCTCACCTTGCTGGCCATAAACATGCATCTATGGTGAAGGAGCAAACTTTGGAGTCTAGTGGGACAACTGCTAGCTGA | 1905 | 0.4472 | MGNLQTKWAGTETQPSQSNSPPPSSLPNTRLAPLSSPPSHHHQTSSSSSLANGSGQQHPQPPLTPLSSHLSDRNQTPQEGALCGDLQGKLELKDEGGVGVESLDKVSIFGEKGANGEGVEVDDHRDIEGWESNSWEDDCVRARVRVSVNDGDGDGDGVGAEKRKKRSQYPKKPEAPDCVFYMKGTCKFGSNCKFNHSSDMKAKVAKQQSREREEPAERSGQTECKYYSTLPAAELNFLDLPIRPGEKDCPYYMQHGSCKFGGDCMYNHPDPTVEGFDPPSPARVNDTSSFVPMMLSPAQVSSQGSYWNAYQEPIYPSVVSMHPPTHIMNNPAINTNTSPHQQRMQVGVDEFAEIPEDSKSKSKRKKNKLASLPPSNLNDKSLPLGPAVGSSSALSSSLPLTHEAATLLPNQTKGSRSMRCEVCKINCNSKDVYEKHISGKKHLKNMEINANTMLANGGNNVGNIVRNSQDVYNKHIAGKKHVAQVALMSNNGIGPWNKAPKKIKVMQPVWCDTCKITCNNRDMYASHLVGKKHLNNLEKQSKPEANANAGKLLIGPQEKPNADKPKSNKAKDLDIEAKKLKVVEGGTAADSVRMCTLCNVVCNSETVFNAHLAGHKHASMVKEQTLESSGTTAS | 634 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151042g00020 | 634 | ProSiteProfiles | Zinc finger C3H1-type profile. | 243 | 271 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | ProSiteProfiles | Zinc finger C3H1-type profile. | 172 | 199 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 552 | 571 | - | - | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 146 | 172 | - | - | |
Stsc151042g00020 | 634 | PANTHER | PROTEIN PHOSPHATASE RELATED | 231 | 386 | - | - | |
Stsc151042g00020 | 634 | SUPERFAMILY | CCCH zinc finger | 246 | 271 | IPR036855 | GO:0046872 | |
Stsc151042g00020 | 634 | Gene3D | Classic Zinc Finger | 403 | 448 | - | - | |
Stsc151042g00020 | 634 | Gene3D | Classic Zinc Finger | 569 | 625 | - | - | |
Stsc151042g00020 | 634 | SUPERFAMILY | beta-beta-alpha zinc fingers | 590 | 625 | IPR036236 | - | |
Stsc151042g00020 | 634 | Gene3D | Classic Zinc Finger | 498 | 544 | - | - | |
Stsc151042g00020 | 634 | SMART | ZnF_U1_5 | 506 | 540 | IPR003604 | GO:0003676|GO:0008270 | |
Stsc151042g00020 | 634 | SMART | ZnF_U1_5 | 590 | 624 | IPR003604 | GO:0003676|GO:0008270 | |
Stsc151042g00020 | 634 | SMART | ZnF_U1_5 | 415 | 449 | IPR003604 | GO:0003676|GO:0008270 | |
Stsc151042g00020 | 634 | SMART | c3hfinal6 | 243 | 270 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | SMART | c3hfinal6 | 172 | 198 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Stsc151042g00020 | 634 | SUPERFAMILY | beta-beta-alpha zinc fingers | 505 | 540 | IPR036236 | - | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Stsc151042g00020 | 634 | Pfam | Zinc-finger of C2H2 type | 420 | 442 | - | - | |
Stsc151042g00020 | 634 | Pfam | Zinc-finger of C2H2 type | 510 | 533 | - | - | |
Stsc151042g00020 | 634 | Pfam | Zinc-finger of C2H2 type | 595 | 617 | - | - | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 29 | 81 | - | - | |
Stsc151042g00020 | 634 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 245 | 269 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 176 | 197 | IPR000571 | GO:0046872 | |
Stsc151042g00020 | 634 | SMART | c2h2final6 | 509 | 533 | IPR013087 | - | |
Stsc151042g00020 | 634 | SMART | c2h2final6 | 593 | 615 | IPR013087 | - | |
Stsc151042g00020 | 634 | SMART | c2h2final6 | 418 | 442 | IPR013087 | - | |
Stsc151042g00020 | 634 | Gene3D | - | 132 | 209 | - | - | |
Stsc151042g00020 | 634 | Gene3D | - | 224 | 275 | - | - | |
Stsc151042g00020 | 634 | SUPERFAMILY | CCCH zinc finger | 175 | 199 | IPR036855 | GO:0046872 | |
Stsc151042g00020 | 634 | SUPERFAMILY | beta-beta-alpha zinc fingers | 405 | 447 | IPR036236 | - | |
Stsc151042g00020 | 634 | MobiDBLite | consensus disorder prediction | 355 | 394 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151042g00020 | Stsc-Chr151042 | 152926 | 156994 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151042g00020 | 169 | 310 | C2H2 Transcription Factor Family | AT3G02830 | 33.520 | 1.74e-23 | 100 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Stsc151042g00020 | zf-CCCH | 1.2e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151042g00020 | - | - | adu:107463587 | 381.333 |