LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151042g00018	ATGGATGGTAGAAGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGGGTGCGGTCACTCAGGGATCCATCAACTAACTGCATTAACAAGCTCTCTCCTTTGATTGACAATGTTCAATGGGAAAACGGTTCTAATAATGGGATTTCGCTGCGCTTCCTCGATGCTTCTCATGCATGCGCTTCCGGTGATAACATTGATGGTTTTAGATCAAAGACTTTAGAGTTTAAGGAACATAGGGAGCAGGATACTGCTGATTTTGAACCGAATTGTGGCCTTTTGAACTCTAACATGAACTATCATGGGATTTCGGGTCAGGAAACAAGGCAAGACGACGAGCTAGTTTATGCTAACGGTAATCAGCAAGACATTCTTGGGAATAAATCACCTAGTGAAAGCTGTAGTAGCAACTATGGGGGCAGAGGGTTGGACCTAGCTGGCATGGTGCCATCTGTTAATCATTCAAGGGACGGGGAATCATGCTATTTATCATCACAATTAGGGAGAGTAGATAACTTGAAGCCAAACCGAAAGTTGCAGCGCAGGACTTCTACTCAAGTTAAACCATCTGAAGCAACAGGTGATACTGCTAGCCGTGTAGGTAGTCCACACCTTTCTCTTGGTGATGCTCTATCAGCTCATAGCGCTTCAGTCCGTATGACTCAAGATGCTTTAGATAGTCTCCATGGATGCGGAATAAGTTGTTGTTGGTCGAAATCCCCAAGATTTAGAGAATCAAGTCATTACTCTGAAGTAGAAGATCTTCCTTTGTTGTTGCAACAGGCTAATGAGACTGATGTTTATGGAGGCACAAGCACTAGACACGTAGGCGGCCAAGGTAGTCCAAATTTGGAAACTCCAAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTTGGCGATTTGGTGGGGCAGAATGTGGTTGGAAGGTCACTTATGGGGGCCATTTCGAGTGGAAGGATAACATCATTTTACCTTTTCCATGGTCCCCGTGGTACTGGAAAGACATCTGCTTCTAGGATATTTTCAGCTGCATTGAATTGCCTATCCCTCGGGGAGCAAAGGCCATGTGGTATGTGCAAAGAGTGCATTTCGCTCTTTTCTGGAAGAAGTAAGGATGTTAAGGAAGTTGATTCTTTGAGAATCAACCATGCAGACAAGATTAAGTCCCTAATTAAGAATGCTTGTATTCCTCCGGTTTTGTCACGGTTTAAGGTGTTCATTATCGATGAGTGCCAGTTCTTGAATGGGGAAACATGGGCTACTCTTTTGAATGGCCTAGATAAAGTTTCTCAATATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGGAATGTGGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGATTAAAGATGCTGATATCGCAAGCAGATTAGAAAGAATCTGTGTTGAAGAAGGCCTTGAATTCGAACGAGTTGCTTTGGACTTCATTGCTGCTAAATCTTGTGGTTCTCTTAGAGATGCAGAAATGATGCTTGATCAGCTGAGCTTGCTTGGTAAAAAAATCACACTTACCTTAGCCCACGAGCTTACTGGTGTCGTTTCAGACGATGAATTGCTTGATTTGTTGGACTTGGCTTTGTCATCTGACACTTCAAATACGGTTATAAGAGCCCGGGAGCTGATGAGATCACGGATTGATCCATTGCAACTTGTATCACAGCTGGCAAATCTTATTATGGACATTCTTTCAGGGAAGTCTGAAGTTGCCGAAGCAGACATGCAGAAACTGAGTCATGCATTAAAAGTACTTTCAGAAACAGAGAAGCAATTGAGAATTTCAAAGAATCAAAGAACGTGGTTCACCGCAGCGCTTCTACAATTAAGTGCCGAAGAGTATCCACCTGCTGACGCAAATGATGCCAAGTTGTATTTGAAAGCTGCTACGAATAGAGATGGTGATTTCTGCAGCACATCATCGACCGGGGAGAGCTTGAAGAATCTTGCTACGGGTCAATGTGATGAAAAGTCATATAGATTAGGGATGCAGGAGGATCAGAAAAGAACATTGGATTCCATATGGTATAAAGCTACTGAGATATGCCAATCTAACCGGCTCAAGGCTTTTCTCAGGAAGCAGGGAAAGTTATCTTCGCTTTGTTTCAATCAAGGTCTTGCAGCTGCTGAGTTGGAATTCCACCGTCGTGACAGTGTAGCTAGAGCCGAGAAGTCGTGGAAACTGATTGCAAGTTCCCTGCAGATTATACTGGGTTGCAACATTGAGCTCAGGATCAATTATGTACCTTGTGTCTCAGAATCTAAGTATGCCAGACTAAAGAGGTCATCCTTCAATTTCTTTAATTGTTCTCGCAGAATTCTACGGAAATCGATGCCTTCTGACGACCAAGGAAGCGAATCAGACTATGCTGATCAAACTTCTGAGAAGCCCATGATGAAAGATCAGACTCTAACTTGTTCCTCGGATTTTGGATCCCGGGTGCCACTACCTGAAGTTGTAGCAGCTTTGAGAAGTTGTGAAGGGAATCTGCTAAGCTCTGGGAAAACATTTCTGAATATGTCTACTCAAGAGACTCCAAGGAATTCATGTTCCAGAGCTGATTCTCTCAAGGAAGAGGAATTCAAACATGCCCATTTACCTTCGTCGAACATCGATTTAGATTATCAGTCTAAGTGTTTCCCTAGAACCTTCTGGCTTCATAAGAAATTCTATTCTTCGCATGCATCACAACAGAAGGATTTTGTTTTCTCAAGCCACTACGTTTATCCCCCGCAGCTCTAA	2790	0.4301	MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCINKLSPLIDNVQWENGSNNGISLRFLDASHACASGDNIDGFRSKTLEFKEHREQDTADFEPNCGLLNSNMNYHGISGQETRQDDELVYANGNQQDILGNKSPSESCSSNYGGRGLDLAGMVPSVNHSRDGESCYLSSQLGRVDNLKPNRKLQRRTSTQVKPSEATGDTASRVGSPHLSLGDALSAHSASVRMTQDALDSLHGCGISCCWSKSPRFRESSHYSEVEDLPLLLQQANETDVYGGTSTRHVGGQGSPNLETPRSLSMKFRPKSFGDLVGQNVVGRSLMGAISSGRITSFYLFHGPRGTGKTSASRIFSAALNCLSLGEQRPCGMCKECISLFSGRSKDVKEVDSLRINHADKIKSLIKNACIPPVLSRFKVFIIDECQFLNGETWATLLNGLDKVSQYVVFVMITPDLDNLPRNVVSRAQRYHFPKIKDADIASRLERICVEEGLEFERVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITLTLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILSGKSEVAEADMQKLSHALKVLSETEKQLRISKNQRTWFTAALLQLSAEEYPPADANDAKLYLKAATNRDGDFCSTSSTGESLKNLATGQCDEKSYRLGMQEDQKRTLDSIWYKATEICQSNRLKAFLRKQGKLSSLCFNQGLAAAELEFHRRDSVARAEKSWKLIASSLQIILGCNIELRINYVPCVSESKYARLKRSSFNFFNCSRRILRKSMPSDDQGSESDYADQTSEKPMMKDQTLTCSSDFGSRVPLPEVVAALRSCEGNLLSSGKTFLNMSTQETPRNSCSRADSLKEEEFKHAHLPSSNIDLDYQSKCFPRTFWLHKKFYSSHASQQKDFVFSSHYVYPPQL	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151042g00018	929	CDD	HLD_clamp_pol_III_gamma_tau	466	529	IPR045085	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	799	814	-	-
	Stsc151042g00018	929	Gene3D	-	467	529	-	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	793	814	-	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	272	292	-	-
	Stsc151042g00018	929	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	319	515	IPR027417	-
	Stsc151042g00018	929	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	294	690	-	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	176	209	-	-
	Stsc151042g00018	929	Pfam	DNA polymerase III, delta subunit	309	466	-	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	272	293	-	-
	Stsc151042g00018	929	NCBIfam	DNA polymerase III subunit gamma/tau	293	625	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Stsc151042g00018	929	FunFam	DNA polymerase III subunit gamma/tau	467	529	-	-
	Stsc151042g00018	929	MobiDBLite	consensus disorder prediction	183	204	-	-
	Stsc151042g00018	929	Gene3D	-	287	464	IPR027417	-
	Stsc151042g00018	929	SUPERFAMILY	post-AAA+ oligomerization domain-like	531	630	IPR008921	GO:0003677\|GO:0006260

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151042g00018	Stsc-Chr151042	132480	137524	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151042g00018	285	608	Core DNA Replication Machinery Family	AT1G21690	25.767	3.48e-15	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151042g00018	-		-	pcin:129308301	1118.99