Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151042g00004 ATGGCAATCATGCCTCTCTTCAAGCCCCTTACAATGGTATCACAATCATGTCTACTCTCTCCCCCGTCATTCTCTTACACCAAACCCAAACACTCCTCCTTTCACTCAATTCCTCATTCTTCTACCCCACTCAGATTCCAACTTGCATGCTTCAACTCTTCTTCTCTCCTTTCACTTTCACCCTCTCTATGCCTCACCACCAGGACCATTCATCATTCTCCTGTGCTCACCTTTGTCGCACAAGCATCATCAGATTGGGCTCAGCAGCAACAAGTTGATGGCGAAGAAGAAGAAGAAGAAGAAGCATCGTGGGAGAACGAAGGCGAACCCAAATGGGAAAACCAAGATGATGATACTGAAGCTCTGATTGATGGTAATGAGGGAGATGGGGAAGGTGGCTTTGATGAACCTTCCGAGGATACAAAACTCTTTGTTGGAAACCTGCCTTTTGATGTTGATAGCCAGAGACTTGCCATGCTCTTCGAGCAGGCCGGAACGGTGGAGATAGCCGAGGTTATTTACAATAGGGCAACAGACCGGAGTCGCGGGTTTGGCTTTGTAACAATGAGTACAGTTGAGGAAGCTGACAGGGCTGTGGATAAGTTCAGTGGCTATGAATTAGATGGAAGAACATTGACTGTTAATAAGGCTGCTCCAAGAGGAACGCAGCCGGAGCGCACACCACGAGCCTTTGATTCTTCCTTAAGAGTATATGTTGGAAACTTGCCTTGGGATGTTGATAATATTCGACTTGAGCAAATTTTCAGTGAGCATGGCAAGGTTGAGCAAGCTCGGATAGTCTATGACAGAGAAACCGGTAGATCACGCGGCTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAACTTGGATGGGCGGTCCCTCAGAGTGAGTGTTGCTGAGGAGAGACCGAGACGCAGCTTCTGA 960 0.476 MAIMPLFKPLTMVSQSCLLSPPSFSYTKPKHSSFHSIPHSSTPLRFQLACFNSSSLLSLSPSLCLTTRTIHHSPVLTFVAQASSDWAQQQQVDGEEEEEEEASWENEGEPKWENQDDDTEALIDGNEGDGEGGFDEPSEDTKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADRAVDKFSGYELDGRTLTVNKAAPRGTQPERTPRAFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQNLDGRSLRVSVAEERPRRSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151042g00004 319 CDD RRM1_PSRP2_like 142 221 - -
Stsc151042g00004 319 SMART rrm1_1 142 215 IPR000504 GO:0003723
Stsc151042g00004 319 SMART rrm1_1 236 309 IPR000504 GO:0003723
Stsc151042g00004 319 MobiDBLite consensus disorder prediction 91 106 - -
Stsc151042g00004 319 MobiDBLite consensus disorder prediction 86 140 - -
Stsc151042g00004 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Stsc151042g00004 319 MobiDBLite consensus disorder prediction 119 134 - -
Stsc151042g00004 319 CDD RRM2_NsCP33_like 236 311 - -
Stsc151042g00004 319 SUPERFAMILY RNA-binding domain, RBD 137 228 IPR035979 GO:0003676
Stsc151042g00004 319 Coils Coil 87 107 - -
Stsc151042g00004 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Stsc151042g00004 319 PANTHER OS02G0815200 PROTEIN 35 317 - -
Stsc151042g00004 319 Gene3D - 80 224 IPR012677 -
Stsc151042g00004 319 Gene3D - 225 318 IPR012677 -
Stsc151042g00004 319 FunFam 31 kDa ribonucleoprotein, chloroplastic 225 319 - -
Stsc151042g00004 319 SUPERFAMILY RNA-binding domain, RBD 228 317 IPR035979 GO:0003676
Stsc151042g00004 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 307 IPR000504 GO:0003723
Stsc151042g00004 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151042g00004 Stsc-Chr151042 18816 21463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151042g00004 116 317 Eukaryotic Initiation Factors Gene Family AT3G16380 31.280 8.31e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151042g00004 - - gmx:100804984 360.147