Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00054 ATGCAAAACCAGATAGTTCTATGGTTTTTGTCCTTTCTATTCTTATCTATACTAAGAAACTCCACTTCACTGGACAATCTAACTCCTCTTCAATCCATCACTGATGGTGAGACATTAATTTCCAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCTGGAAATTCAAAGGGCAGATACTTAGGCATATGGTACCATAACATATCCCCTAAGGTAGTGGTGTGGGTGGCTAACAGAGAAAAACCCCTCAACAACACCTCAGGAATTCTAAAAGTCACTGGTGAAGGACTACTTGTCCTTGTTAATGGCAGCACCAACAGCACCATTGTGTGGTCCTCCAACATTTCAAGAAAAGTGGAAGACAAATGGAATAATCCAGTTGCACAGCTCTTGGAGTCAGGTAATCTTGTTGTCAAAGATGGACATAACAGTGACCACTTTCTATGGCAGAGCTTTGATTATCCTCGTGACACATTCGTCCCTGGAATGAAGCTGGGATGGGATCTTGTGAAAGGTCTAGAGAGGACTCTAACATCTTCGAAAAGTATTGATGATCCCGGCCGTGGAGACTACACATTTAGAATAGATCTTCGAGGCGATCCTCAAATAATTCTAATGAATGGAAATGCCATAACAATTAGAGTAGGGCCATGGAATGGACTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATAGCCAATTTTCATCTCAGTTTGTTTTCAATGAAGAAGAGGTGTTTGTTAGGTTCAGACCAGAAAATACATCAAAGTTTATTAGAGGTGTAGTGCTCCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCAATACCAGAAGCTGAATGCGACAAGTATGCTCTATGTGGTGCAAACTCAATTTGCAGGACCACTCCCACTCCTGTTTGTGAATGTCTTGAAGGATTTGTACCAAAATTTCCAGGAAAATGGAAGGACTCTTATTGGTCTGATGGCTGTGTTAGGATCACTCCCTTAAGTTGCAGCAATGATGACTTCAAGAAGGTCACAGGGATAGTGCTGCCTGACACGGCTGCATCTTGGTATAACAGGACCATGAATCTGCTGGAATGCAAGGAATTCTGTCTCAAGAATTGTTCTTGTACAGCATATTCCAATTTGGATATCCGCAATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTATTGACGTTAGACAAGGGACACAAGACTTCTATATTCGAATAGCAATTTCAGAGCGAGATGATAACCAGAACAATTCTTTCAGTCAGATGAAGCTGGCAGGCATCATTGTTGGCTCTATGTTGTTAATCATCAGCATAATATTTGGACTAAAATTATTTCGATGGAGAAGAAAACTTGAGGAGCCAGATATATTTTGGTTGAAGCGACGTAATCACAAACGAGAAAAGGAAGACATGGACCTCCCAACATTTGATTTATCAACCATAGTTTATGCCACCAATCAATTTTCTAGCAGTAACGAATTGGGAAAAGGTGGATATGGATCTGTTTATAAGGGTGTACTTGCAAATGGAACCGAGATTGCGGTCAAGAGACTATCCAAGAACTCAGACCAAGGACTTCAGGAATTCAAAACTGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTACGAGCTCATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAAGAAACTTGTTAGATTGGGTTAAGCGCTTTCACATTATTCGTGGCACAGCACGAGGCCTAGTTTATCTGCATCAGGACTCCAGGCTAAGAGTCATTCACAGAGATCTAAAAACTAGTAATATTCTTCTTGATGAAGACATGAATGCAAAAATATCAGACTTCGGGCTTGCTAGGACATTTGCATGTGATCAGACTGAAGACAAGACAAAAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAGTATGCAGTGCGTGGCTCTTTTTCAATGAAATCAGATGTGTTCGCCTTTGGTGTAATTGTGCTTGAGGTAGTCAGTGGAAAAAGGACTAGAGAGTTCTTTGTCTCAAACCAAAGTCTTAACCTTCTTGGATTTGCATGGGAGCTCTGGAATGAGGAGAGGACTCTGGAGCTGGTAGATGAGTCGCTGCGCGATTCGGTGAATGAAGCTGAAGCACTGAGATGCATTCAGATAGGGCTGTTATGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCATCAGTAGTTCATATGTTGGATGATGATAAAGCATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACACCAACAAGATTCTACACTGATTGATGGTGAAGATGGTGAGGAAGTTCATTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2457 0.418 MQNQIVLWFLSFLFLSILRNSTSLDNLTPLQSITDGETLISSGGTFELGFYSPGNSKGRYLGIWYHNISPKVVVWVANREKPLNNTSGILKVTGEGLLVLVNGSTNSTIVWSSNISRKVEDKWNNPVAQLLESGNLVVKDGHNSDHFLWQSFDYPRDTFVPGMKLGWDLVKGLERTLTSSKSIDDPGRGDYTFRIDLRGDPQIILMNGNAITIRVGPWNGLMFSGATLYLRYSQFSSQFVFNEEEVFVRFRPENTSKFIRGVVLPWGGVQVLHWSIQTRGWETLISIPEAECDKYALCGANSICRTTPTPVCECLEGFVPKFPGKWKDSYWSDGCVRITPLSCSNDDFKKVTGIVLPDTAASWYNRTMNLLECKEFCLKNCSCTAYSNLDIRNGGSGCLIWFHDLIDVRQGTQDFYIRIAISERDDNQNNSFSQMKLAGIIVGSMLLIISIIFGLKLFRWRRKLEEPDIFWLKRRNHKREKEDMDLPTFDLSTIVYATNQFSSSNELGKGGYGSVYKGVLANGTEIAVKRLSKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFDDARRNLLDWVKRFHIIRGTARGLVYLHQDSRLRVIHRDLKTSNILLDEDMNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGKRTREFFVSNQSLNLLGFAWELWNEERTLELVDESLRDSVNEAEALRCIQIGLLCVQERPEHRPNMSSVVHMLDDDKALPRPRLPAFYSHQQDSTLIDGEDGEEVHSANEVTISLLGAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00054 818 SMART ntp_6 343 419 IPR003609 -
Stsc151041g00054 818 Pfam PAN-like domain 343 408 IPR003609 -
Stsc151041g00054 818 CDD PAN_AP_plant 339 420 - -
Stsc151041g00054 818 ProSiteProfiles Protein kinase domain profile. 501 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00054 818 SMART serkin_6 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00054 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 759 - -
Stsc151041g00054 818 Pfam D-mannose binding lectin 73 181 IPR001480 -
Stsc151041g00054 818 ProSiteProfiles PAN/Apple domain profile. 343 420 IPR003609 -
Stsc151041g00054 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Stsc151041g00054 818 Pfam Protein tyrosine and serine/threonine kinase 504 772 IPR001245 GO:0004672|GO:0006468
Stsc151041g00054 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Stsc151041g00054 818 Gene3D Transferase(Phosphotransferase) domain 1 577 780 - -
Stsc151041g00054 818 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Stsc151041g00054 818 Gene3D Hepatocyte Growth Factor 341 418 - -
Stsc151041g00054 818 CDD B_lectin 31 155 IPR001480 -
Stsc151041g00054 818 Pfam S-locus glycoprotein domain 214 322 IPR000858 GO:0048544
Stsc151041g00054 818 SMART blect_4 30 155 IPR001480 -
Stsc151041g00054 818 SUPERFAMILY Protein kinase-like (PK-like) 484 788 IPR011009 -
Stsc151041g00054 818 CDD STKc_IRAK 507 773 - -
Stsc151041g00054 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 577 780 - -
Stsc151041g00054 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 576 - -
Stsc151041g00054 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Stsc151041g00054 818 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Stsc151041g00054 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 152 - -
Stsc151041g00054 818 Gene3D Phosphorylase Kinase; domain 1 470 576 - -
Stsc151041g00054 818 Gene3D - 20 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00054 Stsc-Chr151041 345376 348532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00054 426 803 Receptor kinase-like Gene Family AT4G23190 46.907 1.46e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00054 PK_Tyr_Ser-Thr 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00054 - - aip:107611884 1436.4