Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00053 ATGGAAAGCTTCAAGGTTCTTGTTGTGTGCACCCTTTTGATACTGTTCTACTTCATACCAATCTGCAACACACTGAATTCCATTGATCAAGGACAATCTTTGAAGGAAAATGAGACTTTAGTTTCAGAAGATGGAGCTTTTGAGGCAGGGTTCTTCAACTTTGGAGATTCAAATAGGCAATACTTTGGAATATGGTACAAGGATATTTCTCCAAGAACCATTGTATGGGTTGCAAATAGAGATACACCAATTGAAAACTCCTCAGGAGTGTTGAATGTCACTGATGGAGGAAATCTTGTGATTCTTGCCGGAACGGGGCCTCCTATATGGTCCTCAAATTCAACATCAAGAACTGCTAAGAAGCCTTTCTTGCAGCTCTTGGACACTGCAAGCCTTGTTGTGAAAGATGGAAGAAATAGCCCTCAGAATCTTATCCTATGGCAGAGCTTTGATATACCTGGGGACACTTTTCTACCAGGTATGAAGCTTAGGGCTAACATGGCAAGTGGTAATTATACATCCTTGATATGTTGGAGGGACACACAAGATCCTGCTATGGGTTTGTATGCATACCGCATAGACCCTCATGGTTATCCTCAAATGGTTATCACAAAAGGAGGGACATTAATATACAGAGTAGGTTCTTGGAATGGAAATATGTTATCTGGTGTTCCTTCTGAATCATTGTACAAAACCTTCAATTCGTCCTTTGAATTGAATGATCAAGAAGTGTCTTATGGCTATGAACCCTTCAACAAGTCAATTGTTTCAAGGTACATGGTCACTACTTCAGGCCAAATACAACGTTTCATTTTAGACCAAACCAAAACCTGGCAGCTCTTCTTTGCTGGCCCAGTAGACCAGTGTGATAATTATGCCTTCTGCGGATCGAATTCGAATTGTGATGTTTCGAATTCACCCCAGTGTGATTGTCTTCAGGGTTTTGCTCCAAAATCTCAGGAGAAATGGAGTGCTCAGAATTGGTCTGGAGGGTGTGTTAGGAATGTTAATTTGTCTTGTGACAGCAGAGATGGATTCTTGAAGTTTTCAGGAATGAAAATTCCTGACACATCGAAATCATGGTATAATAGGAGCATGAGCCTTGAGGATTGTAAGAGCTTTTGTCTGAAAAATTGTTCTTGCACGGCGTGCGCAAATTTAGATGTCAGACATAGCGGAAGCGGCTGCTTGCTTTGGTTCAATGACATTGTGGATGTGAGGAAACAAACCTCTGGAGGACAAGATCTTTACATAAGAGTAGCAGCTTCAGAATTAGACAATAACAAGGGCTTGAGCAAGAAGCAACTTGCAGGGATTCTGGTAGGATGTTCATTATTCATCATTGTGATGGTAATTCTTGGAATTGTCATGCATAGGAAGAACAAACTCAAGAAATCAAACATGAACCAACAAATCAGCTGGAAGAATCACAGTATTGACAAAGAGAAGGAAGACATTGACATACCACTATATGATTTATCAACCATAGCTATTGCAACTAGCCACTTCTCAATCAATAAGAAATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACATTAACAAATGGGCAAGAAATAGCTGTGAAGAGGTTGAGCCATAGCTCAGGACAAGGAACAAATGAGTTCATTAATGAAGTTAAGCTAATCGCCAATCTTCAACATCGAAATCTTGTGAAGCTTCTCGGGTGTTGCATTCATGGAGATGAGAGGCTTTTGATATATGAATTCATGCCCAACCGAAGCTTGGACTGCTTTATATTTGATCAAGCTAAAAGAAGTTTACTGCATTGGGATCAACGTTTCCAAATTATTCGTGGAATTGCTCGAGGACTTCTCTATCTCCACCAAGATTCTAGATTAAGGATTATCCATAGAGATCTCAAAACAAGCAATATTCTTCTTGATCAAAATATGAATTCAAAAATATCAGACTTTGGTCTCGCTAGGACTTTTGGAGGAGATCAAGTAGTAGGCAAAACAAAAAGAATAGTAGGGACTTATGGTTATATTTCACCTGAGTATGCTGCTCGTGGGAATTTCTCAGTAAAGTCTGATGTCTTCAGTTTTGGTGTAATTGTTCTAGAGACAATTAGTGGACACAAAAATAGGGAATATTTTGATGATAATGATCTTAACCTTCTTGGGCATGCATGGAGGCTGTGGTGTGAAGAGAGGCCATTGGAGCTTATAGATGAATCAGTAGCTGATTCAGTTGCTGTAGCAGAACCTGAAGTGTTAAGATGCATTCATATAGGGCTTTTATGTGTACAAGAGAGACCAGAGGATAGACCAGACATGTCAGCCATAGTTCTAATGCTGAATGGTGAGAAACCATTGGCAAGGCCAAGAGAACCTGCTTTTTATCCACACCAATTTTGCTCTTCAACAGGAAATTGTGCAGTGAATTCAGCTAATGAAATTTCTATCACATTGTTAGATGCTAGGTAG 2454 0.3985 MESFKVLVVCTLLILFYFIPICNTLNSIDQGQSLKENETLVSEDGAFEAGFFNFGDSNRQYFGIWYKDISPRTIVWVANRDTPIENSSGVLNVTDGGNLVILAGTGPPIWSSNSTSRTAKKPFLQLLDTASLVVKDGRNSPQNLILWQSFDIPGDTFLPGMKLRANMASGNYTSLICWRDTQDPAMGLYAYRIDPHGYPQMVITKGGTLIYRVGSWNGNMLSGVPSESLYKTFNSSFELNDQEVSYGYEPFNKSIVSRYMVTTSGQIQRFILDQTKTWQLFFAGPVDQCDNYAFCGSNSNCDVSNSPQCDCLQGFAPKSQEKWSAQNWSGGCVRNVNLSCDSRDGFLKFSGMKIPDTSKSWYNRSMSLEDCKSFCLKNCSCTACANLDVRHSGSGCLLWFNDIVDVRKQTSGGQDLYIRVAASELDNNKGLSKKQLAGILVGCSLFIIVMVILGIVMHRKNKLKKSNMNQQISWKNHSIDKEKEDIDIPLYDLSTIAIATSHFSINKKLGEGGFGPVYKGTLTNGQEIAVKRLSHSSGQGTNEFINEVKLIANLQHRNLVKLLGCCIHGDERLLIYEFMPNRSLDCFIFDQAKRSLLHWDQRFQIIRGIARGLLYLHQDSRLRIIHRDLKTSNILLDQNMNSKISDFGLARTFGGDQVVGKTKRIVGTYGYISPEYAARGNFSVKSDVFSFGVIVLETISGHKNREYFDDNDLNLLGHAWRLWCEERPLELIDESVADSVAVAEPEVLRCIHIGLLCVQERPEDRPDMSAIVLMLNGEKPLARPREPAFYPHQFCSSTGNCAVNSANEISITLLDAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00053 817 Pfam Protein tyrosine and serine/threonine kinase 504 773 IPR001245 GO:0004672|GO:0006468
Stsc151041g00053 817 SMART serkin_6 503 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00053 817 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Stsc151041g00053 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Stsc151041g00053 817 SMART ntp_6 341 420 IPR003609 -
Stsc151041g00053 817 Gene3D Transferase(Phosphotransferase) domain 1 579 783 - -
Stsc151041g00053 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Stsc151041g00053 817 Gene3D Hepatocyte Growth Factor 336 418 - -
Stsc151041g00053 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 150 - -
Stsc151041g00053 817 SUPERFAMILY Protein kinase-like (PK-like) 488 795 IPR011009 -
Stsc151041g00053 817 SMART blect_4 31 153 IPR001480 -
Stsc151041g00053 817 CDD STKc_IRAK 509 777 - -
Stsc151041g00053 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Stsc151041g00053 817 Pfam D-mannose binding lectin 73 179 IPR001480 -
Stsc151041g00053 817 ProSiteProfiles Protein kinase domain profile. 503 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00053 817 Pfam PAN-like domain 340 406 IPR003609 -
Stsc151041g00053 817 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Stsc151041g00053 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 578 - -
Stsc151041g00053 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Stsc151041g00053 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 762 - -
Stsc151041g00053 817 CDD PAN_AP_plant 336 421 - -
Stsc151041g00053 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Stsc151041g00053 817 CDD B_lectin 32 153 IPR001480 -
Stsc151041g00053 817 Gene3D Phosphorylase Kinase; domain 1 459 578 - -
Stsc151041g00053 817 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Stsc151041g00053 817 Gene3D - 21 150 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00053 Stsc-Chr151041 340997 344298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00053 426 792 Receptor kinase-like Gene Family AT4G23190 51.604 4.78e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00053 PK_Tyr_Ser-Thr 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00053 - - vum:124842963 1202.96