Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00049 ATGGAAGAGTTCTTCACCGTGTTTCTGTTATGCTTTTCATTGCTGCATGATACAGCAGTTTCCACTACCATAGAAAGCATTAGTACTATGCAGTCCCTCGATGATGGCGATACCATGGTTTCAGCTGGTGGAACCTTTGCATTGGGATTCTTCAATAGCAAAGAAGATTCCATGAAACGTTATCTTGGAATATGGTACAAAGAAGTAGTACCTATTACAGTAGTATGGGTTGCCAACAGAAACAATCCCCTCAATGACTCGTCAGGGCTCTTGAAGATCACTGATAAAGGATTGCTTGTTCTTCTAAACAATAACAATAGCATCTTTTGGTCATCCAACTCATCATCAAATTTGATACAACAACCAGTGGCATTGCTTTTGGATACAGGAAACCTCATTGTGAACAGTAACAAAGAGTCAGGATATATTCTTTGGCAGAGTTTTGATTACCCTTTTGACACGCTACTGCCGGGGATGAAGCTGGGAAGTGATTTAACTACAGGGCTAAGTAGGAACCTAACATCATGGAGTAGCCCTGATGATCCTTCTAAAGGTAACTATACCTTTCAGCTTGATATTGTTGGATATCCGCAGTTATGTATAAGAAGCGGTGAATTAAAGACATTTTGTAGTGGATCTTGGAATGGTATTCGGTTTAATGGAATTCCCCATCTAAAACCGAATCCTATATTCAAGTATTACTTTGTTTCAAACAAGAAGGAGATGTATTATGGATTTGAGCTTATTAATAGCTCAGTTTTTTCAAGGTTGGTGATAACTTCCGATGGAACCATACAACGTTCTAACTGGAGGGATAACAATCAAGGTTGGATAAACTATCTGTCATCACCAACAGATTCATGTGATTATTATGCTAAATGTGGAGTATATGGTAGCTGTAATATAGACAATTCCATACAATGTGGTTGTTTAAAAGGATTTGAGCCTAAGTTTCCTGAAGAATGGAATCAGCTAGATTGGACTAAAGGTTGTGTCAGAAGAACTCCACTCAGTTGCCATGAAGATGGATTTGAAAGGATTTCTTCGCTCAAGTTACCTGACACTGAGAGATCATCATGGTTGAATGTAAGCTTGAGTCTCGATGAATGTGCTAAGATTTGCAAGAGCAATTGCTCCTGCATGGCTTATGCTGCATTGGATATCAGGAAAGAGGCAAGTGGTTGTTTACTATGGTATGGTGAGCTGATAAATATTAGAGTGCTGAGTGATCCACAGCAAGATCTTTATGTCAGAATGTCCAAGAAAGACTCAGGTAACATGAGACGCAATCCAGAAGAGCATGAGGAGGAAGAACTAGAGCTACCCCTGTTTGATAGAGCTACACTTAATTCTGCAACTAGTAACTTTTCCACTGATAACATATTAGGAACAGGTGGTTTTGGTACTGTTTATAAGGGTATACTGGAAAGGGGAGAAGAAATAGCTGTTAAGAGGCTCTCTGAAAACTCTAGGCAAGGACTTAAAGAGTTTAAAACCGAAGTCATGCACATCGCGAAACTTCAGCACAGGAATTTGGTGAAGCTTCTAGGATGTTGCATTCAAGTGGAAGAAAGGATGCTGGTCTATGAGTTTATGCCTAATAAAAGCTTGGACCACTTCATATTTGTCATTGATGGTTCTTATGAGCTTTTGAAGCTCATAAGAATATCAGTCCAAACTTATTTCTCTTCTAAAACAGATGGTGAGAAAGGCATATTACTAGACTGGCCTAAGCGTTTTCTCATTATCAATGGTATTGCCCGAGGCCTTCTATATCTTCATCAAGACTCGAGACATAGAGTGGTACACAGAGATCTCAAGGCTGGAAATATTTTGTTAGACATTGAAATGAATCCGAAAATCTCGGATTTTGGCCTAGCAAGAAGCATTGTAGGAACTGAAAATGAAGCAACCACAAATTATGTTGTTGGAACTTATGGCTATATGGCACCAGAGTACATAATTGATGGGCAATTCTCAACAAAATCCGATGTGTACAGCTTCGGTGTCTTAGTATTGGAAATAGTTAGTGGGAGGAGAAATAGAGCATTCAGACATAGAGATCACCACTATAGTCTTCTTGGGCATGCATGGACATTTTTCAATGAAGATAAGTGGTTAACTATAGTCGATGGATGTATGAGAGATTCAATAAATTTACCAGAAGTGAAGAGATCGATTCAAGTGGGTCTGCTATGCGTGCAACGAAATCCAGAGGATAGGCCAAGCATGTCAGAGGTGCAGATGATGCTGAGTAGTGAATGTGCATTGCCTCGACCAGAAAAGCCTGGATTCTTTACTGAGAGAGATTTGGTTGGTCAGAGTTCTTCATCAAGCAACAACAAAGGATTGTCAATTACTCAACTCTCAGTTACTGAGGTTCATCCACGGTAG 2394 0.396 MEEFFTVFLLCFSLLHDTAVSTTIESISTMQSLDDGDTMVSAGGTFALGFFNSKEDSMKRYLGIWYKEVVPITVVWVANRNNPLNDSSGLLKITDKGLLVLLNNNNSIFWSSNSSSNLIQQPVALLLDTGNLIVNSNKESGYILWQSFDYPFDTLLPGMKLGSDLTTGLSRNLTSWSSPDDPSKGNYTFQLDIVGYPQLCIRSGELKTFCSGSWNGIRFNGIPHLKPNPIFKYYFVSNKKEMYYGFELINSSVFSRLVITSDGTIQRSNWRDNNQGWINYLSSPTDSCDYYAKCGVYGSCNIDNSIQCGCLKGFEPKFPEEWNQLDWTKGCVRRTPLSCHEDGFERISSLKLPDTERSSWLNVSLSLDECAKICKSNCSCMAYAALDIRKEASGCLLWYGELINIRVLSDPQQDLYVRMSKKDSGNMRRNPEEHEEEELELPLFDRATLNSATSNFSTDNILGTGGFGTVYKGILERGEEIAVKRLSENSRQGLKEFKTEVMHIAKLQHRNLVKLLGCCIQVEERMLVYEFMPNKSLDHFIFVIDGSYELLKLIRISVQTYFSSKTDGEKGILLDWPKRFLIINGIARGLLYLHQDSRHRVVHRDLKAGNILLDIEMNPKISDFGLARSIVGTENEATTNYVVGTYGYMAPEYIIDGQFSTKSDVYSFGVLVLEIVSGRRNRAFRHRDHHYSLLGHAWTFFNEDKWLTIVDGCMRDSINLPEVKRSIQVGLLCVQRNPEDRPSMSEVQMMLSSECALPRPEKPGFFTERDLVGQSSSSSNNKGLSITQLSVTEVHPR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00049 797 ProSitePatterns Protein kinases ATP-binding region signature. 462 484 IPR017441 GO:0005524
Stsc151041g00049 797 Gene3D - 19 148 IPR036426 -
Stsc151041g00049 797 SMART serkin_6 456 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00049 797 CDD STKc_IRAK 462 751 - -
Stsc151041g00049 797 Pfam Protein tyrosine and serine/threonine kinase 458 750 IPR001245 GO:0004672|GO:0006468
Stsc151041g00049 797 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Stsc151041g00049 797 Gene3D Hepatocyte Growth Factor 337 418 - -
Stsc151041g00049 797 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 742 - -
Stsc151041g00049 797 CDD B_lectin 30 151 IPR001480 -
Stsc151041g00049 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Stsc151041g00049 797 SMART ntp_6 339 419 IPR003609 -
Stsc151041g00049 797 Pfam PAN-like domain 339 405 IPR003609 -
Stsc151041g00049 797 CDD PAN_AP_plant 335 418 - -
Stsc151041g00049 797 SMART blect_4 30 151 IPR001480 -
Stsc151041g00049 797 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Stsc151041g00049 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 420 531 - -
Stsc151041g00049 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Stsc151041g00049 797 SUPERFAMILY Protein kinase-like (PK-like) 437 751 IPR011009 -
Stsc151041g00049 797 Pfam D-mannose binding lectin 73 176 IPR001480 -
Stsc151041g00049 797 Gene3D Transferase(Phosphotransferase) domain 1 555 757 - -
Stsc151041g00049 797 Gene3D Phosphorylase Kinase; domain 1 430 531 - -
Stsc151041g00049 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Stsc151041g00049 797 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Stsc151041g00049 797 PIRSF SRK 1 436 IPR024171 GO:0004674
Stsc151041g00049 797 PIRSF SRK 418 797 IPR024171 GO:0004674
Stsc151041g00049 797 MobiDBLite consensus disorder prediction 766 797 - -
Stsc151041g00049 797 ProSiteProfiles Protein kinase domain profile. 456 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00049 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 532 759 - -
Stsc151041g00049 797 MobiDBLite consensus disorder prediction 770 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00049 Stsc-Chr151041 320850 324165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00049 444 797 Receptor kinase-like Gene Family AT4G23140 50.273 6.58e-109 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00049 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00049 - - adu:107462372 1038.48