Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00033 ATGGAGCTGCTTCTCCTCACTCTTCATCTTCTTCTGTTTCCCTTCACAACATCACAACAACAGAACCAAAATTATTACCCTTCTTCTGTGACACTCAGAAACGATACCTACTGTGACTACCCTTCAGTTTGTGGACCAAACGGCAACTGTGACATTAATCAGTCACCAGCATGTTTCTGTTTGGATGGTTTCACACCTAAGTCACCCACTGGTTACAGTTCAATGGATTATACACAGGGCTGTGTTAGAAAAATAGCCTTGAATTGTAGCACTGATGTGTTTGTTGCCTATTCTGTGTTTAAGGAACCAAGTGGCAACTACACTTTGTTGAATCAAAGCTTGGGCGATGATGGTTGCAAGGGAAAGTGCAAGAGTAATTGTTCTTGCACTGGTTATTCTGTAACTACTGGTGGTGGATGCAAATTCTGGAGTGGTGATTTGTGTGATGTTAGATTGGTTAAGGATGGAGGTCAAGTTCTTTATATTCGAATGTCAGCTTCAGATGAAAACGAATCTGGATGGGGAAATCAGTCAAATCACAAGAAGATAGTTGGAATAATAGTAGGAAGCACTGTTGCTGCAATTTTTGGAATGATAATGATATTGGCCTGTTGTTACATGTTAAGAAAAAGAAGAACAAAGTTAGCAGATATTTCATTGAGGACTAGTGATGAGATTGCTGATCAACTCAATGGATATGAAGAAGGAGATATAGAGCTTCCATTTCTTGACCTATCAAGAATAGTTGAGGCGACTGATAATTTTTCAATGGAAAACAAATTAGGGGAAGGTGGTTTTGGACCTGTGTACAAGGGGACATTCGATGACGGTCGCCAAATTGCGGTGAAAAAGCTTTCCAGTAGTTCCGGGCAGGGGATAAAGGAATTCAAGAATGAAGTGCTACTAATAGCTAAACTCCAACATCATCAAATAAGGCAAAAACTATTGGATTGGCCTAAGCGTTTCAACATCATTTGTGGGATTTCTAGAGGCCTACTTTATCTTCACGAGGATTCTAGGTTGAGAATTATACACAGAGATCTCAAAGCAAGTAATATCTTACTAGACAGTGAGATGGATCCAAAGATTTCTGACTTCGGTTTGGCTCGATGTTTCGGAGGAGATCAAAGCAAGGCAAATACAAAGAAAATAGTAGGAACATTCGGATATATGGCTCCAGAATATGCTATTAGTGGACACTTCTCAGTAAAATCGGATGTGTTCAGTTTCGGGATTTTGTTGCTTGAGATAATCACAGGGAGAAAAAATAGAGGGATATATTTTCCAAGTGACAATGTCAATCTATATGGACATGCATGGGATCTATGGAAGCAAGGAAGGTGCTTAGAACTTGTTGATGAATGGCTAAAGGAGTCATGGAATTCGTCGGAAGCGCAGCGGTGCATCCACATTTGCCTGCTATGCGCGCAGCAGCATCCGCAAGATAGGCCGGACATGTCATCTGTGGTCCTGATGCTGGGAAGCGAAATCGATTTGCCTCAACCGAAGTTTCCTACATTCATCATTGGTGGAAATTCTGATGGAAGAAGTTCTTCATCTTGTCAAAATGAAATAAGCATTACAGAGGTGGCACCAAGATAA 1602 0.4076 MELLLLTLHLLLFPFTTSQQQNQNYYPSSVTLRNDTYCDYPSVCGPNGNCDINQSPACFCLDGFTPKSPTGYSSMDYTQGCVRKIALNCSTDVFVAYSVFKEPSGNYTLLNQSLGDDGCKGKCKSNCSCTGYSVTTGGGCKFWSGDLCDVRLVKDGGQVLYIRMSASDENESGWGNQSNHKKIVGIIVGSTVAAIFGMIMILACCYMLRKRRTKLADISLRTSDEIADQLNGYEEGDIELPFLDLSRIVEATDNFSMENKLGEGGFGPVYKGTFDDGRQIAVKKLSSSSGQGIKEFKNEVLLIAKLQHHQIRQKLLDWPKRFNIICGISRGLLYLHEDSRLRIIHRDLKASNILLDSEMDPKISDFGLARCFGGDQSKANTKKIVGTFGYMAPEYAISGHFSVKSDVFSFGILLLEIITGRKNRGIYFPSDNVNLYGHAWDLWKQGRCLELVDEWLKESWNSSEAQRCIHICLLCAQQHPQDRPDMSSVVLMLGSEIDLPQPKFPTFIIGGNSDGRSSSSCQNEISITEVAPR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00033 533 MobiDBLite consensus disorder prediction 513 527 - -
Stsc151041g00033 533 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 299 501 - -
Stsc151041g00033 533 Gene3D Transferase(Phosphotransferase) domain 1 309 505 - -
Stsc151041g00033 533 Pfam Protein tyrosine and serine/threonine kinase 315 490 IPR001245 GO:0004672|GO:0006468
Stsc151041g00033 533 Pfam Protein tyrosine and serine/threonine kinase 256 312 IPR001245 GO:0004672|GO:0006468
Stsc151041g00033 533 MobiDBLite consensus disorder prediction 513 533 - -
Stsc151041g00033 533 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 316 517 - -
Stsc151041g00033 533 SMART ntp_6 89 164 IPR003609 -
Stsc151041g00033 533 Pfam PAN-like domain 89 150 IPR003609 -
Stsc151041g00033 533 CDD PAN_AP_plant 87 163 - -
Stsc151041g00033 533 SUPERFAMILY Protein kinase-like (PK-like) 240 493 IPR011009 -
Stsc151041g00033 533 Pfam S-locus glycoprotein domain 33 68 IPR000858 GO:0048544
Stsc151041g00033 533 SMART serkin_6 255 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00033 533 ProSiteProfiles Protein kinase domain profile. 255 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00033 533 Gene3D Transferase(Phosphotransferase) domain 1 241 308 - -
Stsc151041g00033 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 343 355 IPR008271 GO:0004672|GO:0006468
Stsc151041g00033 533 ProSiteProfiles PAN/Apple domain profile. 89 165 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00033 Stsc-Chr151041 223151 225399 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00033 248 533 Receptor kinase-like Gene Family AT4G11530 50.602 3.44e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00033 PK_Tyr_Ser-Thr 5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00033 - - aip:107610641 636.336