Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00030 ATGGAAGTGCTCCTTTCTTTCATCATAATCAATCTTCATCTCCTCCTCCTTCTTGTTCTTCCTCCTTTCACCTACACCAGTGTCTCAGCTGATTCGTCTTCGTCTTCTTCCTCCGGGTTGCAAAATGATACGATGTGTGACTACTACGGATTTTGTGGAGCAAATGGGAACTGTGATCTTACTAATCCAAAATACTGTGAGTGTTTAGATGGTTTCACACCAAAGGACCCCACTGCCTATGGTTCCTCTGACTCTAGATCGGGATGTGTTAAGAACAAAGCATGGAATTGTAGCACTGATGTGTTTGTTAGACACTCTCTTCTTCATGAACCAAATGGCACTTATTCTATGTTTGGAGGTGATCAAGATTGCAAGGCAAAGTGCTCTAGTGACTGTTCTTGCATAGCTTATGCTATAATTGCAAGTGGTGGTGGTGGATGCAAATTGTGGAGTGGTAATTTGTTTGATGTTAGGTTCGTTAATGGAAGAGGTCAAGATCTCTATATTAGAACACCAGCTTCAGATCAAGGAAAGAAAGATGGTGGAGGTGGAAATCAAGGTAGGAATGAGGGATTGGTGGTAGGAATAGTTGTTGGGAGCACTATAATTGTGATTTGCGGGATGATCGTCGCTTCTTGTCATTTTCTCAGGAAAAGGACACAGTCAAAAGAATTTGGACGTGCAAGGATAAATGAGATGGTTAGTCATAACACTCACACCAACAATGAACAAAAGGAAGATTTAGGGCTTCCATTATTTGACCTGGCAAGAATAGCTGTGGCCACAAGCAATTTCTCCCCAGACAATAAGCTTGGAGAAGGTGGTTTTGGCCCTGTATACAAGGGTATACTAGATGATGGGCGACAAATTGCTGTAAAGAGACTCTCAAGTAGTTCTGGACAAGGCCTAAATGAATTTAAAACCGAAATAAAACTAATAGCTAAACTTCAACATCGTAATCTCGTGAAGCTTTTGGGATGTTGCATCCAAGAGAAAGAGAAAATGCTAATTTACGAATACATGCCTAATAGAAGTTTGGACTATTTTATTTTTGATCAAATGCAAGAGAATGTTTTGGATTGGCCTAAGCGCTTTAATATTGTTCACGGAATTGCTAGAGGCTTGCTCTATCTTCATCAAGATTCAAGACTCAGAATTATACATAGAGATCTTAAAGCGAGTAATGTTTTACTCGACAGTAAGTTGGATCCTAAAATATCTGATTTTGGTTTAGCTAAAACTTTTGGAGGGGATCAGAGTAACGCAAATACAAATAGAGTTGTCGGAACTTTCGGATATATGGCCCCAGAATATGCCGTTAACGGACAATTTTCAGTAAAATCGGATGTCTTTAGCTTCGGAATTTTATTACTAGAAATTATATCGGGAAAGAGAAACAAAAAGTTTTATTATGCAAATAACGACGATAGCTTATACGGACATGCATGGGAGTTATGGAAGCAAGGAAGGTCGCTAGAGCTTGTGGATGAAACCCTCAAAGATTCATGGAATTTGAGTGAAGTACAACGTTGTATCCACATTGGTCTCCTATGTGCACAACAATATCCCCATGATAGACCAACCATGTCTTCTGTGGTTCTAATGTTGGGAAGTGAGTTTGATTTGCCTAAACCTGAAATTCCTACATTTTTCATTGTTGAACCTTTTGATGCTTCAAGCTCTTCCACGGGTAAAAATGACTTGAGCATCACAGATATGGAGGCTCGATAA 1731 0.3957 MEVLLSFIIINLHLLLLLVLPPFTYTSVSADSSSSSSSGLQNDTMCDYYGFCGANGNCDLTNPKYCECLDGFTPKDPTAYGSSDSRSGCVKNKAWNCSTDVFVRHSLLHEPNGTYSMFGGDQDCKAKCSSDCSCIAYAIIASGGGGCKLWSGNLFDVRFVNGRGQDLYIRTPASDQGKKDGGGGNQGRNEGLVVGIVVGSTIIVICGMIVASCHFLRKRTQSKEFGRARINEMVSHNTHTNNEQKEDLGLPLFDLARIAVATSNFSPDNKLGEGGFGPVYKGILDDGRQIAVKRLSSSSGQGLNEFKTEIKLIAKLQHRNLVKLLGCCIQEKEKMLIYEYMPNRSLDYFIFDQMQENVLDWPKRFNIVHGIARGLLYLHQDSRLRIIHRDLKASNVLLDSKLDPKISDFGLAKTFGGDQSNANTNRVVGTFGYMAPEYAVNGQFSVKSDVFSFGILLLEIISGKRNKKFYYANNDDSLYGHAWELWKQGRSLELVDETLKDSWNLSEVQRCIHIGLLCAQQYPHDRPTMSSVVLMLGSEFDLPKPEIPTFFIVEPFDASSSSTGKNDLSITDMEAR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00030 576 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 229 340 - -
Stsc151041g00030 576 Pfam PAN-like domain 97 157 IPR003609 -
Stsc151041g00030 576 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 544 - -
Stsc151041g00030 576 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 42 559 - -
Stsc151041g00030 576 CDD PAN_AP_plant 112 172 - -
Stsc151041g00030 576 ProSiteProfiles PAN/Apple domain profile. 97 172 IPR003609 -
Stsc151041g00030 576 ProSiteProfiles Protein kinase domain profile. 265 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00030 576 CDD STKc_IRAK 271 536 - -
Stsc151041g00030 576 SUPERFAMILY Protein kinase-like (PK-like) 249 557 IPR011009 -
Stsc151041g00030 576 Pfam S-locus glycoprotein domain 41 75 IPR000858 GO:0048544
Stsc151041g00030 576 Pfam Protein tyrosine and serine/threonine kinase 268 534 IPR001245 GO:0004672|GO:0006468
Stsc151041g00030 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Stsc151041g00030 576 SMART serkin_6 265 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00030 576 Gene3D Transferase(Phosphotransferase) domain 1 341 542 - -
Stsc151041g00030 576 SMART ntp_6 97 171 IPR003609 -
Stsc151041g00030 576 Gene3D Phosphorylase Kinase; domain 1 225 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00030 Stsc-Chr151041 208100 211496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00030 192 550 Receptor kinase-like Gene Family AT4G23230 53.611 7.45e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00030 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00030 - - aip:107610641 923.309