Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00028 ATGAGAAACTCTTTCTTTAATATGCCAATCTCCATCTTCTTCTTCTACCTTCTTCTTCTCTTACCCATCTCCAAAACCATTGCTGCAAACAACACCATAACTCACTACACCCAGTCTCTAACCCAAAACCAAACCTTACTCTCCATCAACACAACCTTCAAACTTGGTTTCTTCACTCCCAACAACTCCACAAACCTCTACCTCGGAATATGGTACAACAATCTTCCTCTTCAAACTGTTGTATGGGTTGCAAACCGAGACAAACCAATCACAACAAATTTAAACATCTCTCCAGTTTTGAAGATAAACACCACAGACAACAGCACCACGCTTCTTCTCCTTCAGAACAACTCTGTTATATGGTCTACACCGCCGTCGAGACTCGCTTCCAATCCGATTCTTCAGCTACTTGATTCAGGGAACCTTGTTCTGAGAGAGAACGACGATGAGAATCAAGAGAACTACCTATGGCAGAGCTTTGATTACCCTTCTGACACTCTTCTTGCAGGGATGAAGCTTGGGAAGAACTTGAAAACCGGCTTGGATCGAATCGTGACGGCATGGAACACGGTGAATGATCCTTCTCTTGGAAACTTAACATGGAGGATGGAAGTTACAGCTTGGCCACATCCAATTCAAGCAGTTGGTTCTAAGAAACAATTCGACACCGGACCTTGGGATGGATTGGATTATAGCAGCAAACCAACCAGAGTTAAACAACCAACTTTCGATTATGTTTATGTTTCCAATGAGGATGAAGTTTACTTCATGTTCCACCTTGTGAACAACTCTGTTCCAACAAGAATGGTGTTGGATCAGGCTAGTTTAAGGCGTTGGTATTCGGTTTGGGACTACGGTTCGCAACAATGGAAGGTCTATAACTCGCTGCCGCGAGACTTTTGCGAGGCGTATGGTGTTTGTGGCCCAAATGGGAACTGTGATATGTCAAAGTTGCCTTCTCAGGCTTGTGATTGTTTGAGAGGGTTTAGGCCTAAGTCGCCGGAAGAATGGAATGCACAGAACCGCTCGAGAGGTTGCTTGCGCGACAAGCCACGGAATTGCGAGAGCGATGGGTTTGTTAAGTATGTGAAGATGAAAGTGCCTGATACTGAGAATTGCTGGTACTTGAACCAGACCATGAATCTTGATGAGTGCAGAGAGAAATGCTTGAGGAATTGTTCTTGTGTGGCTTATACGAATTCGGATATTCGAGGTGAAGGTAGTGGTTGTGCTTTGTGGTCTGGTGATCTTTATGATCTGAGGATTTTACCAGATGCAGGCCAAGATTTGTACATTAGAGTGCCAGCTTCAGTGTTAGACACAAACAATGGACGCAAAGTCAAGATAGGAGTTTCAGTTGGAGTCACAGTTGGGGTATTATGTGGCCTACTCTTAGCTTTCTGTTTGATCCGGAAAAGACGAAAAAGGGCCACTCTGAAAGAGGCTAATGCAGCATTAAAGGATCATTCCAAGGAAGAACAAGAGGAAGACCCAGAGGTTCCATCCTATGACCTATCTGTTATAGCTTCTGCCACTGATAATTTTTCAGACAAAAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTGTTTAAGGGAACACTAGAAAATGGACAAAGAATTGCAGTTAAGAGACTTTCAACTGGTTCTGGACAAGGTGTCAAGGAATTTAAGAATGAAATTGCATTGATAGCCAAACTTCAGCATCGTAATCTTGTAAAGCTTCATGGATATTGCATCCAGAACGAAGAGAAATTGCTTGTATACGAATATATGCCTAATAAGAGCTTGGATTTCTTTATATTTGATGAAACACAAAGAATGGTATTGGATTGGCCAAGACGATTTAATATAATCGTTGGCATTGCAAGGGGTCTTCTCTATCTTCATCAAGATTCAAGACTTAGAATAATTCACAGAGATCTTAAAGCGAGCAATGTTTTACTCGACGACGAGATGAATCCCAAAATTTCAGACTTCGGATTGGCTAGAATTTTGTTAGGAGACCAAACCGCGGATTCTACCCGTCGGGTGGTTGGAACTTATGGATACATAGCTCCCGAATATGCTATAGATGGAAACTTCTCGATAAAATCAGATGTTTTTAGTTTTGGTGTGTTGTTGCTAGAGATAGTATCAGGAAGGAAGAACAGAGGAGATCCCAACCAAAAAGAAAGTACAAGCCTTATTGGACATGCGTGGAATTTGTGGATAGAAGAGAGGCCATTGGAGTTGGTTGGAGAATACCTGAGAGAATCATGTAATGCCTCAGAAGCATTGAGGTGCATTCATATTAGTTTTCTATGTCTGCAGCAGCATCCACATGACAGGCCAGAGATGTCATCTGTAATCTTGATGTTAGGTAGTGAAATTGGTTTGCCTAAGCCAAAAGAACCAGCTCTATTTGTTAGAGAATATGCTGCTTCTACTACTACTACAAAGGAGTATGCTTCATCCAACAAGAGTAATTTAGCTTCTGTCAATGAGTTAAGTATCTCCAATTTAGAAGCTCGTTAG 2514 0.42 MRNSFFNMPISIFFFYLLLLLPISKTIAANNTITHYTQSLTQNQTLLSINTTFKLGFFTPNNSTNLYLGIWYNNLPLQTVVWVANRDKPITTNLNISPVLKINTTDNSTTLLLLQNNSVIWSTPPSRLASNPILQLLDSGNLVLRENDDENQENYLWQSFDYPSDTLLAGMKLGKNLKTGLDRIVTAWNTVNDPSLGNLTWRMEVTAWPHPIQAVGSKKQFDTGPWDGLDYSSKPTRVKQPTFDYVYVSNEDEVYFMFHLVNNSVPTRMVLDQASLRRWYSVWDYGSQQWKVYNSLPRDFCEAYGVCGPNGNCDMSKLPSQACDCLRGFRPKSPEEWNAQNRSRGCLRDKPRNCESDGFVKYVKMKVPDTENCWYLNQTMNLDECREKCLRNCSCVAYTNSDIRGEGSGCALWSGDLYDLRILPDAGQDLYIRVPASVLDTNNGRKVKIGVSVGVTVGVLCGLLLAFCLIRKRRKRATLKEANAALKDHSKEEQEEDPEVPSYDLSVIASATDNFSDKNKLGEGGFGPVFKGTLENGQRIAVKRLSTGSGQGVKEFKNEIALIAKLQHRNLVKLHGYCIQNEEKLLVYEYMPNKSLDFFIFDETQRMVLDWPRRFNIIVGIARGLLYLHQDSRLRIIHRDLKASNVLLDDEMNPKISDFGLARILLGDQTADSTRRVVGTYGYIAPEYAIDGNFSIKSDVFSFGVLLLEIVSGRKNRGDPNQKESTSLIGHAWNLWIEERPLELVGEYLRESCNASEALRCIHISFLCLQQHPHDRPEMSSVILMLGSEIGLPKPKEPALFVREYAASTTTTKEYASSNKSNLASVNELSISNLEAR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00028 837 ProSiteProfiles EGF-like domain profile. 297 335 IPR000742 -
Stsc151041g00028 837 Coils Coil 472 496 - -
Stsc151041g00028 837 SMART blect_4 37 163 IPR001480 -
Stsc151041g00028 837 ProSiteProfiles Bulb-type lectin domain profile. 31 157 IPR001480 -
Stsc151041g00028 837 Pfam D-mannose binding lectin 79 188 IPR001480 -
Stsc151041g00028 837 SMART ntp_6 354 434 IPR003609 -
Stsc151041g00028 837 Gene3D - 25 160 IPR036426 -
Stsc151041g00028 837 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00028 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Stsc151041g00028 837 ProSiteProfiles PAN/Apple domain profile. 354 435 IPR003609 -
Stsc151041g00028 837 Pfam PAN-like domain 354 420 IPR003609 -
Stsc151041g00028 837 Pfam S-locus glycoprotein domain 222 333 IPR000858 GO:0048544
Stsc151041g00028 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 793 - -
Stsc151041g00028 837 CDD PAN_AP_plant 351 435 - -
Stsc151041g00028 837 Gene3D Transferase(Phosphotransferase) domain 1 591 791 - -
Stsc151041g00028 837 SUPERFAMILY Protein kinase-like (PK-like) 498 794 IPR011009 -
Stsc151041g00028 837 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151041g00028 837 CDD STKc_IRAK 521 786 - -
Stsc151041g00028 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 480 590 - -
Stsc151041g00028 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 160 - -
Stsc151041g00028 837 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 777 - -
Stsc151041g00028 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 194 IPR036426 -
Stsc151041g00028 837 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Stsc151041g00028 837 CDD B_lectin 37 163 IPR001480 -
Stsc151041g00028 837 Gene3D Phosphorylase Kinase; domain 1 475 590 - -
Stsc151041g00028 837 PIRSF SRK 2 837 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00028 Stsc-Chr151041 196497 200201 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00028 464 837 Receptor kinase-like Gene Family AT4G23140 50.131 8.85e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151041g00028 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00028 - - ahf:112769120 1459.12