Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00022 ATGAGACAAGCAGGTGCATATTCAGGGCTACTATGCGGTGGCATATCTGGAAGAACAGGGCCACACTCTTTGCCATTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGTGAAGATGTTAAGATGATTTCTGGTGAGGCACCTATTGTTTTCTCAAAGGCCTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCTTGGATCATCGCCATCAATGGGAAGAGGAGAACCCTGCATAAGGATGACGTGGCTTCCGCCGTCGCCGCCACTGATATCTTTGACTTTTTGGTCACTTTGGTGTCTCGCAACCATGGAAGCCCTGTGCTTGGTTTGAATGCCACTGATGCTGCTGTTATGGAAATTGAATGA 369 0.4688 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWIIAINGKRRTLHKDDVASAVAATDIFDFLVTLVSRNHGSPVLGLNATDAAVMEIE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00022 122 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Stsc151041g00022 122 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Stsc151041g00022 122 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Stsc151041g00022 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Stsc151041g00022 122 Coils Coil 119 122 - -
Stsc151041g00022 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00022 Stsc-Chr151041 171049 171430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00022 22 103 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.293 1.00e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc151041g00022 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00022 - - adu:107462326 210.69