Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151041g00014 ATGGCTTTGAGGGTGGCCACGGTTGCAGTTGCGGCGCAGCCTTCGTCGCGTGGTTTATGGAGGCTGCTCTCAAGCCATTCTGCTTATCCGCCGTCGGCTACTGCCGCAGCGTTTACTCGACAGGCGGTGGAGCCTAAATCCTCCCTCTTCGTTTCCGGGCTTAACAAACGGACAACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCGCAATTGTTCGTGCTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGATATGGTTTTGTACAATATGCCACTGTAGAAGAGGCTGCAAAGGGCATTGAAAGCATGAATGGCAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAGTCTGTCCCAGAACCTACACAGCAATCTCGCCGGTATCTCCGGCGATAG 417 0.5036 MALRVATVAVAAQPSSRGLWRLLSSHSAYPPSATAAAFTRQAVEPKSSLFVSGLNKRTTSERLLQEFSKFGAIVRARVMIDRTGCSKGYGFVQYATVEEAAKGIESMNGKFLDGWVIFVEYAKSVPEPTQQSRRYLRR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151041g00014 138 CDD RRM_SF 49 120 - -
Stsc151041g00014 138 SUPERFAMILY RNA-binding domain, RBD 39 136 IPR035979 GO:0003676
Stsc151041g00014 138 Gene3D - 32 138 IPR012677 -
Stsc151041g00014 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 124 IPR000504 GO:0003723
Stsc151041g00014 138 PANTHER NUCLEOLAR PROTEIN 8 31 130 - -
Stsc151041g00014 138 SMART rrm1_1 48 120 IPR000504 GO:0003723
Stsc151041g00014 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151041g00014 Stsc-Chr151041 88184 90334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151041g00014 6 126 Eukaryotic Initiation Factors Gene Family AT4G34110 30.328 3.78e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151041g00014 - - adu:107488830 187.578