Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151040g00040 ATGCCATTCATACACACATCATCACTTCCCATATATTCCTTCTCCTCCAATGCACCATCATCACCTTCAACTCTTGCTCTTGCTACCTTTCGATTCTTCACCGCCACACCTTCCAACTTCCTCCGCAAAACAGCACGCCATATCCACATCCCAACTTTCGGGTTTTCCGCCACCAGGAACACCCCTTCTTCCCGTTATGCTTCCACCATCAGAGCCAAAGCTGGAACCACCGATTACTATTCAACGTTGAATGTTAGCCGCAATGCTACTCTCCAAGAAATCAAAGCCTCCTATAGGAAGCTAGCTCGCAAGTACCATCCAGACAAAAGCCCTGGGGCAGAGGAGAAGTTCAAGGAAATAAGTGCTGCCTATGAGGTCCTATCAGATGATGAGAAAAGATCTATATATGACCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGAGGGTCAGCCAGTGCTTCCGGGGTTGATCCATTTGATTTGTTTGATGCATTCTTTGGCCGCTCTGATGGTAGTGGTGTATTTGGAGAAAGTGATGATGGGGGCATCAACTTTGGTTTTAGAAGCAATAGAAGCCGTGGCCTTGATATTCAGCATGAACTCAATTTGAGCTTTGAAGAATCAATTTTTGGAGCACGGAAGGAGATTGAAGTCTCTTGTTTTGAGCCATGTAATGATTGTGATGGTACAGGAGCTAAATCAAGGAGTTGCATTAAAACATGTTCAAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAGAAAACACCCTTTGGAATCATGTCTCAGGTTTCTACCTGCTCTAAGTGTGGTGGTGTTGGCAAGATAATCACTGATCATTGTCGAAGGTGTGAAGGCAGTGGTCAGGTGAAATCTAAACGAACAATGGAAGTAGTAATTCCTCCTGGTGCCAGTGATGGAGACACAACACAAGTTCAAGGGGAAGGGAATTTCGATTCAAGGAGGCATATAAGGGGGGATCTTTTTGTAGTTCTCCATGTAGATGAAAAGCAGGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAATATTGACTTTACAGATGCAATACTGGGATCTGTTAAAAAGGTGGAAACTGTTGAAGGCTTAAGGGATCTCCAAATTCCTTCTGGGGTTCAGCCTGGCGATTCAGTGAAGTTGTCACGTTTGGGAGTTCCAGACATGAATAGACCATCTTTTCGAGGCGATCATTACTTCATTGTGAATGTTCTTATTCCTAAAAATATCAGTGCCACCGAACGTGCGCTTGTTGAACAGTTAGCCTCACTAAGAGCATCTAAATATGATTCATTCTCTTCTAAGGACACTGGGATACCCAAAGGAAAATTTAATGAATTCAAGACGGTTCCAAAAGATCAAGATTCAAGCAAGGGAAATAAACATGTTGGTTCCCTGTGGACATCAATTCAAAATTTCTTAAGGAGAGGACAGTCTGAAGAGAAGTTTGCATCAATTAGCCTGGATACGTCAACTTCATTTTGTAGATTCAGCCACCAAAATTTTTCAGTCCTAGATTCCTTTTTTGTTGTTTTCTTAATAACTTGTGTTTTTGCATCTATTGCAAACTCTAAGGACTCATTATTTCGGAAAAGAACCCAATCCCTCTTAAGAGAGCAGAGTGAAAACAAGTGA 1662 0.423 MPFIHTSSLPIYSFSSNAPSSPSTLALATFRFFTATPSNFLRKTARHIHIPTFGFSATRNTPSSRYASTIRAKAGTTDYYSTLNVSRNATLQEIKASYRKLARKYHPDKSPGAEEKFKEISAAYEVLSDDEKRSIYDRFGESGLQGENGGSASASGVDPFDLFDAFFGRSDGSGVFGESDDGGINFGFRSNRSRGLDIQHELNLSFEESIFGARKEIEVSCFEPCNDCDGTGAKSRSCIKTCSNCGGRGGEMKSQKTPFGIMSQVSTCSKCGGVGKIITDHCRRCEGSGQVKSKRTMEVVIPPGASDGDTTQVQGEGNFDSRRHIRGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGVQPGDSVKLSRLGVPDMNRPSFRGDHYFIVNVLIPKNISATERALVEQLASLRASKYDSFSSKDTGIPKGKFNEFKTVPKDQDSSKGNKHVGSLWTSIQNFLRRGQSEEKFASISLDTSTSFCRFSHQNFSVLDSFFVVFLITCVFASIANSKDSLFRKRTQSLLREQSENK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151040g00040 553 ProSiteProfiles Zinc finger CR-type profile. 212 294 IPR001305 GO:0031072|GO:0051082
Stsc151040g00040 553 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 51 435 - -
Stsc151040g00040 553 Pfam DnaJ central domain 225 289 IPR001305 GO:0031072|GO:0051082
Stsc151040g00040 553 FunFam Molecular chaperone DnaJ 217 294 - -
Stsc151040g00040 553 Hamap Chaperone protein DnaJ [dnaJ]. 75 463 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc151040g00040 553 Pfam DnaJ C terminal domain 198 416 IPR002939 -
Stsc151040g00040 553 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 292 IPR036410 -
Stsc151040g00040 553 Gene3D - 225 289 - -
Stsc151040g00040 553 ProSiteProfiles dnaJ domain profile. 78 140 IPR001623 -
Stsc151040g00040 553 Gene3D - 195 331 - -
Stsc151040g00040 553 Gene3D - 342 433 - -
Stsc151040g00040 553 Gene3D DnaJ domain 75 177 IPR036869 -
Stsc151040g00040 553 CDD DnaJ_C 197 419 - -
Stsc151040g00040 553 CDD DnaJ_zf 225 289 IPR001305 GO:0031072|GO:0051082
Stsc151040g00040 553 Pfam DnaJ domain 78 137 IPR001623 -
Stsc151040g00040 553 SMART dnaj_3 77 132 IPR001623 -
Stsc151040g00040 553 SUPERFAMILY Chaperone J-domain 74 176 IPR036869 -
Stsc151040g00040 553 SUPERFAMILY HSP40/DnaJ peptide-binding domain 343 427 IPR008971 GO:0006457|GO:0051082
Stsc151040g00040 553 CDD DnaJ 78 129 IPR001623 -
Stsc151040g00040 553 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Stsc151040g00040 553 PRINTS DnaJ domain signature 80 98 IPR001623 -
Stsc151040g00040 553 PRINTS DnaJ domain signature 112 132 IPR001623 -
Stsc151040g00040 553 PRINTS DnaJ domain signature 132 151 IPR001623 -
Stsc151040g00040 553 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 349 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151040g00040 Stsc-Chr151040 262622 267930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151040g00040 79 137 C2H2 Transcription Factor Family AT1G74250 40.299 1.77e-07 52.0