Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151040g00008 ATGAGCGTGCAAGCTCAGAGGGACCGGAGGAGTAGGTCCAGGGTTCCGGCGCAAGGTGGTCCACGTCAAGAATGGGTCCCCAGAGGATCATCTACCACTGCTGCTGCTGCTGCTGTTGTTCAACCATCAAATTTGCAACCTGATCAAAATGCTGAATCTGTTGGCAGTTCCAGTAATGGTGCTGTTGTTGCCGCAGCTACCCCTGTTTCCACCGCCCCGCCTGCGGTGGTTCGCCATAATAGGAGCAATCAGGGGCCTGTGAATCAGAGAAGGGAAATGGAGAAAGGGAGGAGTAGTGGAAATCAGGCTGGGAAGGGGTCGAGGTTGAGGGACTCTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAAAAGCTCATGAAAGGGACTGTCGAGTGCATGATTTGTTACGACATGGTGCGGAGGTCTGCCCCTGTTTGGTCTTGTTCGAGCTGCTACTCTATCTTTCACCTCAATTGCATAAAAAAGTGGGCTCGTGCACCTACGTCGATTGATTTGTCGGCTGAGAAGAATCAGGGGTTTAATTGGCGGTGTCCTGGTTGTCAATCGGTGCAGCTCACTTCATCAAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAGAGGGTGGACCCGCCATCAGATTTGTATTTGACGCCACATTCGTGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTGGTGTTTAATGGTGGGAGCAAGGAGGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCAGGTCCTTGTCCTCCTTGTAAAGCATTTGCCCCTCCACGCTTATGTCCATGTGAGAAGAAAACAATTACCACACGATGTTCTGATCGGCAATCTGTTCTTACCTGTGGCCAGCGTTGTGAGAAGCTTCTCGAGTGTGGGCGTCACCGATGTGAACGCATTTGTCACGTGGGAGCTTGTGATCCATGTGAGGTTCTGATCAATGCCTCTTGCTTTTGTAATAAGAAGGTAGAGGTCCTTCCATGTGGGGACATGACTATGAAGGGTGAATTCACAGCAAAAGCTGGAGTTTTCTCTTGTAGTTCCAATTGTGGAAGGAAACTTAGTTGTGGTAATCACACGTGCAGTGAGATTTGTCACCCGGGAAGTTGCGGGGAGTGTGATTTGTTACCAAGGCGTGTTAAGACATGTTGTTGTGGGAAAACAAAATTGGATGAGGAACGCAAGACTTGTTTGGACCCAATACCTACCTGCTCACAAGTTTGTGCCAAATCACTTCCTTGTGGGATACATCATTGTAAAGAGGTGTGTCATGTTGGGGATTGTCCGCCGTGTTTGGTTCTTGTGTCCCAGAAGTGCCGTTGTGGTTCAACTTCTCGCACTGTGGAATGCTATAGGACAACGGACAATGAGAAGTTTACTTGTGAAAAGCCTTGTGGAAGAAAAAAGAACTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCCGCTTTCTAATCCCAACAACAATTTCAGCGGGGAATGGGATCCACACTTTTGTTCGATGCCATGTGAAAAGAAGTTACGATGTGGCCAGCATGCTTGTGAATCATTATGTCATAGTGGCCATTGCCCACCTTGTCTTGAAACTATCTTTACAGACCTGACATGTGCTTGTGGTAGGACTTCAATCCCACCTCCACTGCCTTGTGGTACACCGCCTCCTTCATGTCAGCTCCCATGTTCAGTTCCTCAGCCTTGTGGCCATGTAGCCTCGCACAGTTGCCATTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATTGTGCAAGGCTTACCAGCGCCTTGTGGCCAAACATGTGGAGCTCCTAGAAGAGACTGTCGACATACATGTACAACTCCATGTCACCCGTCCTCTCCATGCCCGGACCAGTAGTAATTATAATGCTGATGCTGTACATGAAGCTTCCATCACTCAGAAATTGCCCATCGCGCTACAACCAGTTGATCCGAATGGCAAGAAGGTTCCTCTTGGACAAAGAAAGCTGATGTGTGATGATGAATGTGCTAAGTTAGAGCGCAAGAGGGTTCTTGCTGATGCTTTTGATATTACTACACCAAATCTTGATTCTCTCCATTTTGGCGAGAACTCTGTTGATTTGATTTCTGATTTGTACCGGCGTGATCCTAAATGGGTCATATCTGTGGAGGAGAGATGCAAATTTTTAGTGCTTGGCAAAACCAGAGGCACTACACATGGTTTAAAGGTCCATGTTTTCTGTCCTATGCTTAAGGAGAAAAGGGATGCGGTTAGGGTAATTGCGGATAGATGGAAGCTTGCTGTGAGTGCTGCTGGTTGGGAGCCGAAGCGTTTTATAGTAGTTCATGTTACCCCAAAGTCAAAAGCCCCAATCCGTGTGCTAGGAGTTAAGGGTACTCCAACTATAAGCGCACCTCTGCCGCCTGCATTTGATCCCTTGGTAGACATGGACCCTCGACTTGTTGTATCATTTCCTGACTTACCACGGGAGGCTGATATTAGTGCTTTGGTTTTGAGATTTGGTGGTGAGTGTGAGCTTGTTTGGCTGAATGACAAAAATGCCTTGGCTGTTTTTCACGACCCTGCTCGAGCTGCAACGGCAATGAGGAGGTTAGATCATGGTACATTTTATCAGGGAGCTGTTTCTGTTGTCCCCAATGTTGGGTCAGCTGCCACCACTTCAACTACAAGTGCCTGGGGAGGAGGGACAATGAAAGAAGGAGCACTATCTGCGTTAAAAGGTAATGCATGGAAGAAAGCTGTGGTTCAAGAGTCCGGTTGGAGAGAAGATTCTTGGGGCGATGAAGAATGGACTGCTGGATCTGCCAATGTCCAGCAATCTGCTTGGAAGAAAGAAGCACCAATAGCTGCTTCTTTTAATCGTTGGAATGTATTAGACCATGAAACAGGTTCAAGTTCATCTTCTACAAATGTTAAAAAAACTCAAGTTTCTGTGAAAAACACGGAAAGCAGTGCTGTCTTGAGGTTGGAGTCTCAAGCAAGTGGCTCAAATGAACAAGGGAGACATGGTGGGAACTTGGATGCAGCTGAAACTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3099 0.475 MSVQAQRDRRSRSRVPAQGGPRQEWVPRGSSTTAAAAAVVQPSNLQPDQNAESVGSSSNGAVVAAATPVSTAPPAVVRHNRSNQGPVNQRREMEKGRSSGNQAGKGSRLRDSSLPQLVQEIQEKLMKGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEREVVFNGGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCEKKTITTRCSDRQSVLTCGQRCEKLLECGRHRCERICHVGACDPCEVLINASCFCNKKVEVLPCGDMTMKGEFTAKAGVFSCSSNCGRKLSCGNHTCSEICHPGSCGECDLLPRRVKTCCCGKTKLDEERKTCLDPIPTCSQVCAKSLPCGIHHCKEVCHVGDCPPCLVLVSQKCRCGSTSRTVECYRTTDNEKFTCEKPCGRKKNCGRHRCSERCCPLSNPNNNFSGEWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHVASHSCHFGDCPPCSVPVAKELCKAYQRLVAKHVELLEETVDIHVQLHVTRPLHARTSSNYNADAVHEASITQKLPIALQPVDPNGKKVPLGQRKLMCDDECAKLERKRVLADAFDITTPNLDSLHFGENSVDLISDLYRRDPKWVISVEERCKFLVLGKTRGTTHGLKVHVFCPMLKEKRDAVRVIADRWKLAVSAAGWEPKRFIVVHVTPKSKAPIRVLGVKGTPTISAPLPPAFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTFYQGAVSVVPNVGSAATTSTTSAWGGGTMKEGALSALKGNAWKKAVVQESGWREDSWGDEEWTAGSANVQQSAWKKEAPIAASFNRWNVLDHETGSSSSSTNVKKTQVSVKNTESSAVLRLESQASGSNEQGRHGGNLDAAETSEVVDDWEKAYE 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 578 590 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 478 489 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 246 261 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 363 380 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 299 316 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 421 438 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 Pfam NF-X1 type zinc finger 516 533 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 299 318 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 516 535 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 421 440 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 478 512 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 363 382 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 244 262 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 SMART znfxneu3 573 591 IPR000967 GO:0005634|GO:0008270
Stsc151040g00008 1032 ProSiteProfiles Zinc finger RING-type profile. 132 188 IPR001841 -
Stsc151040g00008 1032 MobiDBLite consensus disorder prediction 969 1032 - -
Stsc151040g00008 1032 MobiDBLite consensus disorder prediction 25 65 - -
Stsc151040g00008 1032 SUPERFAMILY RING/U-box 122 191 - -
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 468 527 - -
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 411 459 - -
Stsc151040g00008 1032 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 76 596 IPR034078 GO:0003700
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 506 549 - -
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 221 282 - -
Stsc151040g00008 1032 MobiDBLite consensus disorder prediction 969 1010 - -
Stsc151040g00008 1032 ProSiteProfiles Zinc finger PHD-type profile. 129 190 IPR019787 -
Stsc151040g00008 1032 MobiDBLite consensus disorder prediction 1 114 - -
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 289 337 - -
Stsc151040g00008 1032 CDD RING-CH-C4HC3_NFX1-like 131 188 - -
Stsc151040g00008 1032 MobiDBLite consensus disorder prediction 100 114 - -
Stsc151040g00008 1032 CDD NF-X1-zinc-finger 353 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151040g00008 Stsc-Chr151040 42919 46288 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Stsc151040g00008 zf-NF-X1 9.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151040g00008 K12236 - cave:132185411 987.252