Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151039g00067 ATGTCACAGAGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATGATTTGGTGGATAATCGTTCAACGGACGACGTGATTTCTTGGGGTGAGAGTGGCAACACTTTTGTGGTGTGGAAGCATGCAGATTTCGCTAAGGATTTGCTTCCTAATTATTTCAAGCACAACAACTTTTCCAGCTTTGTTCGTCAGCTCAACACCTATGGTTTCCGAAAGATTGTGCCAGACAAATGGGAATTTGCCAACGAACATTTCAAGCGAGGCCAAAAGCAACTTCTCTCCGAGATCAAGCGCCGCAAAACGGCTCACCCTCCGCCGCAGCCAGACAAATCCGGTGGCGACGGAAACTCTCTGTTGAACTCAGGCGGCGATGACATGGGTTCGTCGTCCACCTCTTCCCCTGATTCAAAGAACCCGGGATCCGTGGAAACAACGACTACTAACACCACCGCTCATCATCAGTGCGCCAATTTATCGAGCGAGAACGAGAAATTGAAGAAGGATAACGAGACGCTAAATTGCGAGCTGGCACGTGCGAAGAAGCAGTGCGATGAGTTGGTGGCTTTCTTAACGGACTCCCTTAAGGTGAGTCCTGATCAGATCTACCACATCATGAGGCAAGGAAAATGCGGGTCCACCCATGGTCCGGTCCAATCTGATGACACTCTAGTTGATAATGACGACGAAAAAGTAGGTGAGGCCGCTGGGCCAAGCAATTTGAAATTGTTTGGTGTTTGGTTGAAACAGGAGAATCATAACAACAACCACAAGAGAGGCCGAGATGGCCCAATGGGCTTTGGTGGGCCTCCAGCAAAGGAGTTGAAGAAAACTACTTCGACTAGTGCTAGTGTTGTTGACTTTGGTGGTTCCAATGTTAAGGTGATGATGAAGAGCAGCAAGGTCTGCAGCTGA 912 0.4923 MSQRSVPAPFLTKTYDLVDNRSTDDVISWGESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKQLLSEIKRRKTAHPPPQPDKSGGDGNSLLNSGGDDMGSSSTSSPDSKNPGSVETTTTNTTAHHQCANLSSENEKLKKDNETLNCELARAKKQCDELVAFLTDSLKVSPDQIYHIMRQGKCGSTHGPVQSDDTLVDNDDEKVGEAAGPSNLKLFGVWLKQENHNNNHKRGRDGPMGFGGPPAKELKKTTSTSASVVDFGGSNVKVMMKSSKVCS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151039g00067 303 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151039g00067 303 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151039g00067 303 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151039g00067 303 MobiDBLite consensus disorder prediction 253 282 - -
Stsc151039g00067 303 MobiDBLite consensus disorder prediction 113 158 - -
Stsc151039g00067 303 Gene3D - 2 101 IPR036388 -
Stsc151039g00067 303 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151039g00067 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 209 IPR027725 -
Stsc151039g00067 303 MobiDBLite consensus disorder prediction 99 164 - -
Stsc151039g00067 303 FunFam Heat stress transcription factor B-4 2 100 - -
Stsc151039g00067 303 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Stsc151039g00067 303 Coils Coil 155 182 - -
Stsc151039g00067 303 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151039g00067 303 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151039g00067 Stsc-Chr151039 386908 389513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151039g00067 2 302 HSF AT4G36990 51.307 1.73e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc151039g00067 HSF_DNA-bind 2.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151039g00067 K09419 - gmx:100791543 366.311