Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151039g00030 ATGCCCTCCTCCGACTCCGGCGAAAGCCGCAGATCAACCAAGCCTCACAACCCTTCACTACCTCCTCCGCCGGCCGAGCAAGAGCACCTACCGTGCCCTCGCTGCGACTCTACTAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCGCAAAAACGCTAAGCGATCCCGCACTGTTCCTTCAGCCTCCACCACCACAAGCTCCTCCTCCGCTGGCGCTGCCGTCTCCTCGGTTTCTTCTGTGGCCCCGATCACTATGGTTCCCGTTGCCGGAAACAACCACCACGGAGAGCCCGTGCAGTTCGGTGGAGTAGTTATGGATGGTGAAGGAAAGGGTAACAGCGTGAGCTTGTGCGGTGGGAGCTTCACTTCGTTGCTGAGCAACGCACAGCAGGGTCCTGGTGGGTTTCTTGCTCTGGGTGGTTTTGGGCTTGGTCTTGGGCCTGGTCTCGAAGATGTTGGGTTTGGAATGGGGATGGGGATGGGGATGGGGAGAGCGGGTTGGGCTTTCCCTGGCGTGGTTGCGGACGGAGGCAGCATTGGCGGGGGAGTTGGTGGGTCCGGTGTTGGGCACACGTGGCAGTTTGAAGGCGGCGATCAAGGTGGTTTTGTTGGTGGAGACTGCTTCCCTTGGCCGGGACTTGCCATTTCCACACCCGGAAATGGTCTCAAATAA 765 0.5961 MPSSDSGESRRSTKPHNPSLPPPPAEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTVPSASTTTSSSSAGAAVSSVSSVAPITMVPVAGNNHHGEPVQFGGVVMDGEGKGNSVSLCGGSFTSLLSNAQQGPGGFLALGGFGLGLGPGLEDVGFGMGMGMGMGRAGWAFPGVVADGGSIGGGVGGSGVGHTWQFEGGDQGGFVGGDCFPWPGLAISTPGNGLK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151039g00030 254 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Stsc151039g00030 254 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 113 IPR045174 GO:0003700|GO:0006355
Stsc151039g00030 254 MobiDBLite consensus disorder prediction 1 32 - -
Stsc151039g00030 254 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Stsc151039g00030 254 MobiDBLite consensus disorder prediction 71 104 - -
Stsc151039g00030 254 MobiDBLite consensus disorder prediction 84 104 - -
Stsc151039g00030 254 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151039g00030 Stsc-Chr151039 164084 165612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151039g00030 1 254 C2C2-Dof Transcription Factor Family AT3G50410 46.388 1.56e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151039g00030 zf-Dof 3.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151039g00030 - - aip:107620759 325.865