Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151039g00020 ATGTTTCTTCTTCTTCATCATCGCCACACAAACTTCGTCATCGTTTTTACAATCTTGATAGCTTTGACGACTGCACAAAACTTCACGAACTGCGATCGCCACTGCGGAGGGAAAACCCTGAACTACCCTTTCGGGTTCTCACATGGCTGCGAAGTGAAGCTCAACTGCAACAACGATCAAGTCCAAGTTGGTGACTTTCTGGTTCAGAACATCACATCCACCACCATTTCCATCAACCTACCCGCCAAATGCAACCGCACCATTCGATCTATCAGGCCACTCTTCAATGACAATTTTGCCCCCACAAGGAACAACAGCTTCCTCGTCCAGAACTGCACGGAGGAGCAAGGCGGCTGCGTTATCCCCGCCGCCACCTTCACTGGCGGCCAGGCTGAGGTTGACAGCTGCGACAGCAGGAGCGGTAACATCAGCTGTTTCACCGCGCAGAGACAGAAAAAGAGAGACAACAACAACGTTTTTGGTGGTGATGATGTTTTGAGTTTCGATGAATTGAGCAACAGTGGTTGCAAGTTCTTGTTCTCTTCGGTTGCTATTGGGCAGAGCAAGGAGGCACTCTTTCTGCAGTTTCAGGTGGTTGAGTTGGGGTGGTGGGTTCAGGGCTCTTGTCATGATTCTGGTTGCTCTCAAAACGCTACCTGTACAGAGGTGATGAATCATCAGGGGAAAAATAGTTCAGGGTTTCGCTGCCAGTGCATTCATGGCTTCCAGGGAGATGGTTTCATCAACGGCACCGGATGCCGGAGAGTTTCAAGTTGCAGTGCATCAACACTAACATCTGGTGGATGTGGGAAAACAACCAAAATAGGTGTTATTGTTGGAGTGATCACAACTGGAGTTTTGGTCGTTGCTATTCTGTCTCTCCTATGCTACTGTGCCAGGCGCCATTCAACTGGGTTGAACAAACATACAACAGCGAAGCGCCTCTTGCGTGAAGCTGCAGGCAACTCCACTGTACCTTTCTACCCTTACAAAGAAATTGAAAGAGCAACAAATTCTTTCTCTGACAAGCAAAGGCTGGGAACTGGGGCATTCGGTACTGTTTATGCTGGAAAGCTTCACAATGATGAGTGGGTTGCTATAAAAAAGATAAGGCAAAGAGACACCAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCTGTGAGTCATGTGAATCTAGTTCGCCTTCTTGGTTGCTGCATAGAGGAGGGAGAGCAGATCCTTGTTTATGAATATATGCCTAATGGAACACTTTCTCAGCATCTGCAAAGAGAGAGGGGTAAAGTTCTTCCATGGACAATAAGACTTACCATTGCAACTGAAACTGCGAAAGCAATTGCATATCTTCATTCTGCAATTCATCCACCAATTTACCACAGAGACATCAAATCCAGTAATATACTCTTGGATTACAGCTTCAAATCCAAAGTTGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCACATATCTCAACTGCTCCACAAGGGACTCCAGGCTATGTTGATCCCCAGTACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGCTTTGGAGTGGTTTTGTTAGAGATAATAACTGCCTTGAAAGTGGTTGATTTTGGTCGACCGCAGAGCGAGGTCAATCTGGCAGCACTCGCTGTTGATAGGATTAGGAGGGGTGCCATAGATGAGATCATAGATCCGTTCCTTGAACCACATCAAGATGCTTGGACACTATATTCGATTCATAAGGTGGCTGAGCTCGCGTTTAGGTGTCTTGCTTTTCATAGCGACATGAGGCCTACTATGATGGAAGTGGCAGAGGAGCTAGAACATATCAAGCGCAGTGGATGGGCATCCATGGAGGAAACCATGTGCCTAGCTTCATCAGTTGGGTCCGGAAACTCATCTCCTCGCAGAGGAAGCGAGAAGTCACCGGTCGGTATCAAGCTAAATAAAGCAGGGCAAGGGAATGAGATGCTGATCATTGCACAGAAGAGCGAAAGCTTTTTAAAATCAACGGAGGTGAAGGACAGCTCTCCGGTATCAGTGCGGGACCCTTGGTCAAGTGGACAGAGCTCACCTTCAACGAACAGTTTGTTGGACAATGCAGTTCATTGA 2127 0.4687 MFLLLHHRHTNFVIVFTILIALTTAQNFTNCDRHCGGKTLNYPFGFSHGCEVKLNCNNDQVQVGDFLVQNITSTTISINLPAKCNRTIRSIRPLFNDNFAPTRNNSFLVQNCTEEQGGCVIPAATFTGGQAEVDSCDSRSGNISCFTAQRQKKRDNNNVFGGDDVLSFDELSNSGCKFLFSSVAIGQSKEALFLQFQVVELGWWVQGSCHDSGCSQNATCTEVMNHQGKNSSGFRCQCIHGFQGDGFINGTGCRRVSSCSASTLTSGGCGKTTKIGVIVGVITTGVLVVAILSLLCYCARRHSTGLNKHTTAKRLLREAAGNSTVPFYPYKEIERATNSFSDKQRLGTGAFGTVYAGKLHNDEWVAIKKIRQRDTNSVDQVMNEIKLLSSVSHVNLVRLLGCCIEEGEQILVYEYMPNGTLSQHLQRERGKVLPWTIRLTIATETAKAIAYLHSAIHPPIYHRDIKSSNILLDYSFKSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLLEIITALKVVDFGRPQSEVNLAALAVDRIRRGAIDEIIDPFLEPHQDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIKRSGWASMEETMCLASSVGSGNSSPRRGSEKSPVGIKLNKAGQGNEMLIIAQKSESFLKSTEVKDSSPVSVRDPWSSGQSSPSTNSLLDNAVH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151039g00020 708 SMART serkin_6 340 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151039g00020 708 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Stsc151039g00020 708 Gene3D Phosphorylase Kinase; domain 1 293 415 - -
Stsc151039g00020 708 ProSiteProfiles EGF-like domain profile. 205 248 IPR000742 -
Stsc151039g00020 708 MobiDBLite consensus disorder prediction 676 708 - -
Stsc151039g00020 708 FunFam Wall-associated receptor kinase-like 20 416 625 - -
Stsc151039g00020 708 ProSiteProfiles Protein kinase domain profile. 340 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151039g00020 708 FunFam Wall-associated receptor kinase-like 14 307 415 - -
Stsc151039g00020 708 Gene3D Laminin 212 249 - -
Stsc151039g00020 708 Pfam Protein kinase domain 341 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151039g00020 708 MobiDBLite consensus disorder prediction 631 652 - -
Stsc151039g00020 708 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524
Stsc151039g00020 708 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 694 IPR044652 GO:0004672
Stsc151039g00020 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Stsc151039g00020 708 Gene3D Transferase(Phosphotransferase) domain 1 416 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151039g00020 Stsc-Chr151039 129777 133956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151039g00020 2 705 Receptor kinase-like Gene Family AT2G23450 56.583 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc151039g00020 Pkinase 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151039g00020 - - gmx:100779130 1011.13