Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151039g00004 ATGGGTTGGTTAGCCAAGTTGCTTAAGGGCTCAAACCACAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACACAATTTGGGATAACCATCATCATACTTCAGTGGATGATTTGAACGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAAGATCAGAAAGGAAAAGGTGTTGTTGAGGATGACTCTCAATCTGAAGAAGATGAACAACTATGCAAAATAGATGATGAAGAAGATGAGCATACTTGTACAGTTCAACAAGAGGAAGATGAAAGTTTTGATAAGGTTAGGCCAGATGAAGATGAACATCTTTCGAAAGTTCAACTTGATGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAGCATTGATTCTCCTCCTAGTCCTAGATATGACAATGACTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAATCTGAAATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACAGTGTTTCCGCTGCAACGCTTGCAATCTTCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATTTTCCATACCATAAATCTTGCTATAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTATATCCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAAAGGGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATACAAAGTATCTTTTGCTTGATGATGGTTTAAACATGAAAGTGGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTGCCTGAAACTAGAGGACTATGTTTGTCAGAAGAGCAAACTGTCACCTCGATTTCAAGGAGACCAAAGATAGGAGCAGGCCATCGGGTCGTAGACATGATAACGGAGCCTTTTAAGCTGATCCGTCGATGTGAAGTGACAGCCATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAATCTGAGTCCAGAGGTCGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGCATCAGGTAGTGATTGTTCATCTTCATCCTCATCGTCGCCTTCTTCCTCCTCGGCGTCATCAAAGAAAGGCAAACGGTCGGATTTTGAGAAGAAGCTGGGAGAGTATTTTAAGCACCAGATTGAAGCTGACACATCTTCAGCTTATGGAAAAGGATTCAGGTTGGGAAATGAGGCAGTGCTCAAGTATGGTCTCAGAAGTACCCTTGATCATATCCAAATGACTGGAAGCTTTCCATATTGA 1491 0.4252 MGWLAKLLKGSNHRTSRGQYHGKYGEDTIWDNHHHTSVDDLNDVEKEDIDCAIALSLSEQDQKGKGVVEDDSQSEEDEQLCKIDDEEDEHTCTVQQEEDESFDKVRPDEDEHLSKVQLDEDEQLARAIQESLSIDSPPSPRYDNDSIFQPLSNLFPPGYRICAGCKSEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNFPYHKSCYREQHHPRCDVCNNYIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLLLDDGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTSISRRPKIGAGHRVVDMITEPFKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSASGSDCSSSSSSSPSSSSASSKKGKRSDFEKKLGEYFKHQIEADTSSAYGKGFRLGNEAVLKYGLRSTLDHIQMTGSFPY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151039g00004 496 CDD LIM_DA1 162 214 - -
Stsc151039g00004 496 MobiDBLite consensus disorder prediction 420 442 - -
Stsc151039g00004 496 ProSitePatterns LIM zinc-binding domain signature. 162 196 IPR001781 -
Stsc151039g00004 496 FunFam Protein DA1-related 1 156 215 - -
Stsc151039g00004 496 ProSiteProfiles LIM domain profile. 160 220 IPR001781 -
Stsc151039g00004 496 MobiDBLite consensus disorder prediction 60 112 - -
Stsc151039g00004 496 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 119 138 IPR003903 -
Stsc151039g00004 496 MobiDBLite consensus disorder prediction 420 438 - -
Stsc151039g00004 496 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
Stsc151039g00004 496 Pfam Protein DA1 280 491 IPR022087 -
Stsc151039g00004 496 SMART uim 44 63 IPR003903 -
Stsc151039g00004 496 SMART uim 119 138 IPR003903 -
Stsc151039g00004 496 PANTHER PROTEIN DA1-RELATED 2 280 496 IPR045218 -
Stsc151039g00004 496 SMART lim_4 161 213 IPR001781 -
Stsc151039g00004 496 Gene3D Cysteine Rich Protein 156 220 - -
Stsc151039g00004 496 Pfam LIM domain 162 217 IPR001781 -
Stsc151039g00004 496 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 187 - -
Stsc151039g00004 496 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151039g00004 Stsc-Chr151039 25286 28458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc151039g00004 DA1-like 8.5e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151039g00004 - - gmx:100817969 793.497