Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151038g00053 ATGGGAGGAAGTGGTAAAACAACAATTGCCAAAGCCATTTATAATAAAATTTTCCGTGAGTTTGAAGGTCGGTGCTTCCTCCTAAATATAAGAGAAGTTTGGGACCAAGATAATGGCTGCCTTCATTTAGAACAACAACTTCTTTCTGCTATCTATAAGACAACGAAAATAAAGATAGAAAACACTGAATCTGGAAAATCAATATTAGAGAAAAGACTTGGCCAGAAAAGGATACTTGTTGTACTTGATGATGTTGACAAATTGGAGCAGCTTAATTCTTTAGCTGCAAGTGGTAAATGGTTCTCTCCTGGAAGCATAATAATCATCACAACCAGAGATGTACATATGCTTCGTTGTCTTAGAGTTGATAAATTATATAGCATGAAAGAGTTCAATGACAAAGAATCCATGGAACATTTTAGCTGGCATGCATTCAAAGAACCATGTCCAAAAAAAGAGTTTGCTTTTCTTGCCAATGAAGTTGTTTCATATTGTGAGAGATTGCCACTTGCTCTTGAGGTGATTGGGTCCCATTTATTCAATAGGAAAGAATATGAATGGAAGAGTGTTTTGAAGAGACTCAAAACTATCCCAAACAATGATGTACAGAAGAAGCTTAAAATAAGTTTTGATGGTCTAAGTGATGATAGGGATAGAGAAATATTTCTTGATGTGGCATTTTTCTTTATTGGAATGGATAAAAATGATGGAGTTGATATACTAAATGGCTGTGGGCATTCTGCTGAAATTGGAATAAATGTTCTTATGGAACGATGCCTTATTACTGTGGACACTAAGAGGAAACTTGGCATGCACGGCTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGAGTTTTCCAAGGAAACCTGAGGAACGCAGTAGATTGTGGAATCCAGAGGAAGTGCTCAATGTGTTATCAAAAGACATGGGAACAAAAACTATCGAGGGACTTGCTCTGAACCTGCTGCCAGAGTCAGTGAATCCGACTCAGTTAAAGACGGAAGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTGCGAATGTGCAACTTGTTGGAGACTTTAAATACCTTTCAGCAGATCTTCGATGGTTGTGCTGGTATGGATGTCCTTCAGAATATACAACTGCAAACTTTGATCAAGCAAATTTAGTTGCTATTGACTTCAAATATAGCCAACTCGAACTTGTATGGAAGAAGGGTCAGATGATGAAGCAGCTAAAAATTCTGAATCTTAGTCATTCTCAACACTTGATACAAACTCCTGACTTTTCAAATTTGCCGAATCTTAAAAAGTTAATACTCAAATATTGTGCTAAGTTGACTTCAGTTTCTCATACCATTGGACATCTCAAGCAAGTTCTTCTAATCAATTTCAAAGGGTGTTCAAGTCTTCGTGTACTTCCAAGAAGCATCTATAAGTTGAAATCTCTCAAAACTCTCATCCTTTCAGGATGTTCATTGATTGATAAGTTAGAAGAAGACATAGAACAAATGGAATCATTGTCAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATACACTACTAAGATTAAAGAGCATTGTGTATGTTTCTTTATGCGACTTTGAAGGATTATCGCGCAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTCTCACCCCAAGTGCAATCAGTTTTGGACTTACCAATATTGTTTCATTAA 1722 0.3693 MGGSGKTTIAKAIYNKIFREFEGRCFLLNIREVWDQDNGCLHLEQQLLSAIYKTTKIKIENTESGKSILEKRLGQKRILVVLDDVDKLEQLNSLAASGKWFSPGSIIIITTRDVHMLRCLRVDKLYSMKEFNDKESMEHFSWHAFKEPCPKKEFAFLANEVVSYCERLPLALEVIGSHLFNRKEYEWKSVLKRLKTIPNNDVQKKLKISFDGLSDDRDREIFLDVAFFFIGMDKNDGVDILNGCGHSAEIGINVLMERCLITVDTKRKLGMHGLLRDMGREIIRESFPRKPEERSRLWNPEEVLNVLSKDMGTKTIEGLALNLLPESVNPTQLKTEAFKEMKRLRLLQFANVQLVGDFKYLSADLRWLCWYGCPSEYTTANFDQANLVAIDFKYSQLELVWKKGQMMKQLKILNLSHSQHLIQTPDFSNLPNLKKLILKYCAKLTSVSHTIGHLKQVLLINFKGCSSLRVLPRSIYKLKSLKTLILSGCSLIDKLEEDIEQMESLSTLMADKTAITQVPHTLLRLKSIVYVSLCDFEGLSRNVFPSIIWSWTSPTNNFSPQVQSVLDLPILFH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151038g00053 573 PRINTS Disease resistance protein signature 165 179 - -
Stsc151038g00053 573 PRINTS Disease resistance protein signature 72 86 - -
Stsc151038g00053 573 PRINTS Disease resistance protein signature 476 492 - -
Stsc151038g00053 573 Gene3D Ribonuclease Inhibitor 295 556 IPR032675 -
Stsc151038g00053 573 Gene3D - 131 214 IPR042197 -
Stsc151038g00053 573 Pfam NB-ARC domain 1 204 IPR002182 GO:0043531
Stsc151038g00053 573 Coils Coil 492 512 - -
Stsc151038g00053 573 SUPERFAMILY "Winged helix" DNA-binding domain 201 307 IPR036390 -
Stsc151038g00053 573 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 539 IPR044974 GO:0006952
Stsc151038g00053 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 224 IPR027417 -
Stsc151038g00053 573 SUPERFAMILY L domain-like 329 546 - -
Stsc151038g00053 573 Gene3D - 1 124 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151038g00053 Stsc-Chr151038 385773 389997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151038g00053 1 493 WRKY Transcription Factor Family AT5G45050 32.177 1.44e-68 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151038g00053 - - ahf:112727920 1014.22