Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151038g00050 ATGGTATTTTCCAGGGATGAGAGCAAAGATACAGAGAGGATTGTTGGACATGTTACTTCCTTGTTAGATTCAACAGACTTATTCGTTGCAGAGCATCCCGTAGGAGTAAACTCTCGAGTGCAAGATTTGATTCAAATAATAAATAATCAGAAATCAAAGGGTGTTCACAGAATAGCGATATGGGGAATGGCAGGAATAGGCAAAACAACAATTGCCAAAGCCCTTTACAATCAAATTAGCTGCAATTTTGAGGTGAGGAAATTTGTCCCCGACATCAAGCAAAGAATAGAGAATTCTAAAAGAACGGACCCTGGGAGAATTTTACAACAAGAGATTGATGATTTTTTCAAAGAAAAACTTAAAACAAAAGTGTCTAACGGTAACCCAATAAGTCTTGAATGGTGGGAAAGACTTTTCGGCACAAAGGTATTTCTTGTACTTGATAACGTGAGGAGTGAGAGAGAACTGGAAGTTTTGTCCCTAATTGGTGAAGGGTTTGCTCCGGGAAGTATAATAATCCTCACGACAAGGACTAAACATGATCAACTTCGTGAGGTTGGAGTTAATCATATATATAAAGTGAAAGAAATGGACTATAACGAATGTGTTGAGCTTTTTAGTTGGACAGCATTCAACAAAGCAACTCCTGAAAGGAGTTTTGCTGGGCTAATTGATTATGCAGTTGAATATTGTGAAAGACTTCCACTGGCTCTTGTGGCCGTCGGCTCTGCACTATCTGAAAAAAGCATAGAAGAGTGGAAAACTGTATTGGATAGCTTCACAAGATTTCCCCTTCAAGACGTATGCCAGATTTTAAAAGAAAGCATTGATTCTGTTGGATATGAAGAGAAGAACATATTTCTTGAACTGGCTTATTTGAGTCATCTCTTTATTGGAACGGATCTAAATGATATAAGTCAGACATTACAAGAAGCTGGTCATAATGCCGCACTGATCGCAAAAGCAATTAAAGGGCTTGAAGATCATAGTCTTGTGTGGTTTAAAGAAGACAAGCTTTGCATGCATCGATTGCTACAACACATCGGATCAGAAATGTATCTTAAGGAATCATCCTTTGAGCCTCAGCAAAGGCCATATGATGTATTCTTGAGCTTTCGAGGCAAAGAAACTCGTTCAAAGTTCCTCTCACATCTTCATGCATCTCTTCAAAATGCCGGTATCTATGTTTTCAAGGATGATGATGGGATTCCAAGAGGGAAAAATGTCTCATTCTCACTTATGAAAGCAATTAGAGAGTCTAAAACTTCTATAATTATTCTGTCACCAAATTATGCATATTCAAAATGGTGTTTGCAAGAGTTGGAAGACATCATCCAATGTTACAAAAACAAAACTCAAAAGTTGTTGCCAGTGTTCTACCATATAGATCCCTCAGAAGTGCGAAACCAAACCGGCAAGTTTGGACAAGCTTTTGAAAATCTCATAAAAAGATCACCGAAATTAAAAGGCAAGGAGCAGAGTTGGAGGAAAGCACTCCACGAAGTTGGGTGCATTGCGGGGTTTGTGATCCGAAAATCCAGGAATGAAAACGAGGATATTAAGAAGATTGTTGAGGATGTTACTCATATGCTTGACATGAAGGAATTGTTCGTAGCTAGTCATCCGGTAGGAGTTGAATCTCGCGTTGAAGAGGTGATTGAACTATTAAAAAACAATCAACCAAGAAATCCTCTACTATTAGGTATATGGGGCATGGGAGGAAGTGGTAAAACAACCCTTGCCAAAGCCGTTTATAATAACATTTTCCGTGAGTTTGACGGCCGGTGTTTTCTCCTAAATATAAGAGAAGCTTGGGATCAAGATAATGGCAGTCTTCATTTACAGCAACAACTTATTTCTACTATCTATAAAACAACGAAAATAAAGATAGAAAACACTGAATCTGGAAAATCAATATTAGAGAAAAGACTTTGCCAGAAAAAGATACTTGTTGTACTTGATGATGTGGACAAATTGGAGCAGCTAAATTCCTTAGCCGCAAGTCATAGATGGTTCTGTCCAGGGAGCACAATAATCATCACAACAAGAGATGAACATCTTCTTCGTTGTCATAGAGTTGATAAGTTATATAGTATGAAAGAGTTAAATGACAATGAATCCATTGAACTTTTTAGCTGGCACGCATTCAAAGAACCATGTCCGAATGAAGAGTTTGATTTAGTTGCTAATGAAGTTGTTTCATATTGTGAGAGATTGCCGTTGGCACTTGAGGTGATTGGGTCATATTTGTTTAATAGGGAAGTATATGAGTGGAGGAGTGTTTTGAAGAAACTCAAAACTATTCCAAACAATGATGTGCATAAGAAGCTTAAATTAAGTTTTGATGGTCTGAGTGACGATAGGGATAGAGAAATATTTCTTGATGTGGCATTTTTCTTTATTGGAATGGACAAAAATGATGTAGTTGATATATTAAATGGCTGCGGTCATTCTGCTGAAATTGGAATAAATGTTCTTATGGAACGATGCCTTATTACTGTGGACACCAAGAGGAAACTCGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGTGTTTGCCGATGAAGCCAGAGAAACGGAGTAGGTTGTGGAATCCAGAGGAAGCGCTTAATGTATTATCAAAAGACATGGGAACAAAAGCTATTGAGGGACTTGCTCTGAACCTGCCAAAGTCAGTGAATCCAACTCAGTTAAAGACGGAAGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTGCAAATGTGCAACTTGTTGGAGACTTCAAATACCTTTCAACTGATCTTCGATGGTTGTGTTGGCATGGATGCCCTTCAGAATATACAACTGCAAACTTTGATCAAGCAAATTTAGTTGCCATTGACTTCAAATATAGTACACTTAAACTACTATGGAAGAAGGATCAGTTAATACTCAAATATTGCCCAAAGTTGACTTCGGTTTCTCATACCATTCAACATCTCAAGCAAGTTCTTCTAATAAATTTGAAAGGGTGTTCAGGGCTCCGTGTACTTCCAAGAAGCGTTTACAAGTTGAAATCTCTCAAAACTCTAATTCTTTCAGGATGCTCATTGATTGATAAGCTTGAAGAGGACATAGAACAGATGGAATCATTGGCAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATGCACTACTACGATTAAAGAGTATTGTGTATATTTCTTTGTGTGACTTTGAAGGATTATCACACAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTGTCATCCCAAGTGCAAACATTTTTGGACCTGTCAAATCTTGTTTCCTTAACTGTACCGAATAGCAATTCTCAAGGCCTATCTTCCATCATCAGAGAGCTGCCACAGGTTCAGAGTGTTAAACTGGGGTGTGGCTCACAACTTCAAATAACAGAAGATATAAATTCTGAAACTTTTAATGTCACAAACTGCGATGATATGATAGTAACATCAAGTGCATCAAATGTCTCAAAAGGGAGTACCTCATCATTCGCTGGTTGTTGCAGCGAACATTACATTATTGAATCAGAAAATTCCTTGAATCCAATTTTAATCCAAATGGGAATGAAATGCTCTGTCACAGAGGTACTTACAGGGAATATTTTCCAGAATTTTAGTGCCAGAGTATCTGGAGATTGTTTGCTTCCTGGCAACCATCATCCTAATTGGTTAACATTCTGTGGCATAGATTCTTCTGTAGCTTTCGATGTCCCTCAAGTGAATGGGCGCAAGTTAAAGACAATGTTGTTGTGTATAGTCTATTCTTCTTCCCCAAATAATGTACCTTCAGAAGACCATATTATCAAAAATCTTTTTATCATAAATCACACAAAGACCACTCCGTATATTTACGATGGAGATACACTGGCTTCACTTAGAGATGAGGAATGGCAGAAAGTAATATCAAACCTTGAGGCTGGTGACAAAGTGCAGATTGTTGTTGTTGCTGGGTTAGGAATCACAGTGAAGAAGACAGCAGTTTATCTCATATATGGCGAACCAGTTGACCAAACCACAGAGCAACAAGCTGAAGGTGATGTTTCTGGTGATGATATGGTAGCAGATGCAAATCTCACTGTTCATGGTGGAGTAGAAAAAAAAAGTTTGAACTCTGTTAGAAAGCGAAAATTCCAGGGACAGGGAGTATGA 4200 0.3824 MVFSRDESKDTERIVGHVTSLLDSTDLFVAEHPVGVNSRVQDLIQIINNQKSKGVHRIAIWGMAGIGKTTIAKALYNQISCNFEVRKFVPDIKQRIENSKRTDPGRILQQEIDDFFKEKLKTKVSNGNPISLEWWERLFGTKVFLVLDNVRSERELEVLSLIGEGFAPGSIIILTTRTKHDQLREVGVNHIYKVKEMDYNECVELFSWTAFNKATPERSFAGLIDYAVEYCERLPLALVAVGSALSEKSIEEWKTVLDSFTRFPLQDVCQILKESIDSVGYEEKNIFLELAYLSHLFIGTDLNDISQTLQEAGHNAALIAKAIKGLEDHSLVWFKEDKLCMHRLLQHIGSEMYLKESSFEPQQRPYDVFLSFRGKETRSKFLSHLHASLQNAGIYVFKDDDGIPRGKNVSFSLMKAIRESKTSIIILSPNYAYSKWCLQELEDIIQCYKNKTQKLLPVFYHIDPSEVRNQTGKFGQAFENLIKRSPKLKGKEQSWRKALHEVGCIAGFVIRKSRNENEDIKKIVEDVTHMLDMKELFVASHPVGVESRVEEVIELLKNNQPRNPLLLGIWGMGGSGKTTLAKAVYNNIFREFDGRCFLLNIREAWDQDNGSLHLQQQLISTIYKTTKIKIENTESGKSILEKRLCQKKILVVLDDVDKLEQLNSLAASHRWFCPGSTIIITTRDEHLLRCHRVDKLYSMKELNDNESIELFSWHAFKEPCPNEEFDLVANEVVSYCERLPLALEVIGSYLFNREVYEWRSVLKKLKTIPNNDVHKKLKLSFDGLSDDRDREIFLDVAFFFIGMDKNDVVDILNGCGHSAEIGINVLMERCLITVDTKRKLGMHGLLRDMGREIIRECLPMKPEKRSRLWNPEEALNVLSKDMGTKAIEGLALNLPKSVNPTQLKTEAFKEMKRLRLLQFANVQLVGDFKYLSTDLRWLCWHGCPSEYTTANFDQANLVAIDFKYSTLKLLWKKDQLILKYCPKLTSVSHTIQHLKQVLLINLKGCSGLRVLPRSVYKLKSLKTLILSGCSLIDKLEEDIEQMESLATLMADKTAITQVPHALLRLKSIVYISLCDFEGLSHNVFPSIIWSWTSPTNNLSSQVQTFLDLSNLVSLTVPNSNSQGLSSIIRELPQVQSVKLGCGSQLQITEDINSETFNVTNCDDMIVTSSASNVSKGSTSSFAGCCSEHYIIESENSLNPILIQMGMKCSVTEVLTGNIFQNFSARVSGDCLLPGNHHPNWLTFCGIDSSVAFDVPQVNGRKLKTMLLCIVYSSSPNNVPSEDHIIKNLFIINHTKTTPYIYDGDTLASLRDEEWQKVISNLEAGDKVQIVVVAGLGITVKKTAVYLIYGEPVDQTTEQQAEGDVSGDDMVADANLTVHGGVEKKSLNSVRKRKFQGQGV 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151038g00050 1399 SUPERFAMILY L domain-like 842 1141 - -
Stsc151038g00050 1399 SMART till_3 365 505 IPR000157 GO:0007165
Stsc151038g00050 1399 Gene3D - 22 185 IPR027417 -
Stsc151038g00050 1399 SMART AAA_5 54 196 IPR003593 GO:0016887
Stsc151038g00050 1399 SMART AAA_5 563 698 IPR003593 GO:0016887
Stsc151038g00050 1399 Gene3D - 538 696 IPR027417 -
Stsc151038g00050 1399 ProSiteProfiles TIR domain profile. 364 531 IPR000157 GO:0007165
Stsc151038g00050 1399 FunFam Disease resistance protein (TIR-NBS-LRR class) 362 533 - -
Stsc151038g00050 1399 Pfam TIR domain 366 529 IPR000157 GO:0007165
Stsc151038g00050 1399 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 366 1147 IPR044974 GO:0006952
Stsc151038g00050 1399 Gene3D - 197 282 IPR042197 -
Stsc151038g00050 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 289 IPR027417 -
Stsc151038g00050 1399 Coils Coil 1032 1052 - -
Stsc151038g00050 1399 PRINTS Disease resistance protein signature 643 657 - -
Stsc151038g00050 1399 PRINTS Disease resistance protein signature 1016 1032 - -
Stsc151038g00050 1399 PRINTS Disease resistance protein signature 566 581 - -
Stsc151038g00050 1399 PRINTS Disease resistance protein signature 736 750 - -
Stsc151038g00050 1399 SUPERFAMILY Toll/Interleukin receptor TIR domain 357 507 IPR035897 -
Stsc151038g00050 1399 Pfam NB-ARC domain 40 279 IPR002182 GO:0043531
Stsc151038g00050 1399 Pfam NB-ARC domain 546 771 IPR002182 GO:0043531
Stsc151038g00050 1399 Gene3D - 701 785 IPR042197 -
Stsc151038g00050 1399 CDD AAA 543 685 - -
Stsc151038g00050 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 795 IPR027417 -
Stsc151038g00050 1399 Gene3D Ribonuclease Inhibitor 878 1227 IPR032675 -
Stsc151038g00050 1399 Gene3D - 360 537 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151038g00050 Stsc-Chr151038 370924 376497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151038g00050 5 364 WRKY Transcription Factor Family AT4G12020 25.137 7.07e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151038g00050 - - ahf:112727920 1955.64