Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151038g00049 ATGGAGCATGAAGATGGTGAAACGGAAGGTGGGGATTGGCAGATATACACATCAAGAAGGAAGGGGCATGGAGTTAGATCAGCTGAGCGAAGAACGTCTTCCAACGACGTGCACTGGAAGTGGGTTCGCTTGGAGAATTCCTCGCATTCGGTTTTCGTGGAGAATCTCCCGGACAACGTGACAAAGGGTCTCCTCTATAGAGTCTTTGGGCGATTGGGCAATATCGTTGATATCTTCATCTCAAGGAGAGTTAAAGGTGGTAAGAGGAAGACATTTGCTTTCGTCAGGTTTGATGCTAGAGGAGAGGCTGTTCGTGCTGTCCAAACAATGAATGGAGTGTTCATTGGCATGAGAAAGATATTCAGCAGGACTAAGAAGGAGGGGAGCAGATTGAGGGAGTGGCCAGTGGAGAGAGGAGAGCAAAGAAAGGAGGAGAAAGGGAGCTTCAATATGAATACTTTGAAAGGGCATGCAAGAAAGGACCTTGATGAAGTTAGAAGAGAACCTCAGTCTGTTGAGCTCCCAAAGGAGTCTTCTTTAGAGAAGATTAGGAAATGCATTGAGGTCGAGCCCTGCCAGATGCAGACAGACAGCCTTCGCAGGAGTCTAGTGGGAGAGTGCAAAAAGGAGATTGTCATGGAAAGGGTTACAAGAAGGTTGAGGGAAGAATGGAAAGGACCCGGGCAAATTGAATGGAGTGATATTGGCCCCAATATGTGTCTCCTTACCTTCGATTCTGAGGAGTACATGGAGATAGCGAAGGAGTCGTCGTTATTATTATCGTTGTTTGAGGAGCTGAGGTCAGAGTGGAGATTTCTCTAG 822 0.4708 MEHEDGETEGGDWQIYTSRRKGHGVRSAERRTSSNDVHWKWVRLENSSHSVFVENLPDNVTKGLLYRVFGRLGNIVDIFISRRVKGGKRKTFAFVRFDARGEAVRAVQTMNGVFIGMRKIFSRTKKEGSRLREWPVERGEQRKEEKGSFNMNTLKGHARKDLDEVRREPQSVELPKESSLEKIRKCIEVEPCQMQTDSLRRSLVGECKKEIVMERVTRRLREEWKGPGQIEWSDIGPNMCLLTFDSEEYMEIAKESSLLLSLFEELRSEWRFL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151038g00049 273 SUPERFAMILY RNA-binding domain, RBD 46 123 IPR035979 GO:0003676
Stsc151038g00049 273 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 30 165 - -
Stsc151038g00049 273 SMART rrm1_1 50 123 IPR000504 GO:0003723
Stsc151038g00049 273 MobiDBLite consensus disorder prediction 132 153 - -
Stsc151038g00049 273 MobiDBLite consensus disorder prediction 1 16 - -
Stsc151038g00049 273 MobiDBLite consensus disorder prediction 1 29 - -
Stsc151038g00049 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Stsc151038g00049 273 CDD RRM_SF 51 120 - -
Stsc151038g00049 273 Gene3D - 15 161 IPR012677 -
Stsc151038g00049 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151038g00049 Stsc-Chr151038 361604 362443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151038g00049 42 143 Eukaryotic Initiation Factors Gene Family AT2G36660 31.818 6.55e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151038g00049 - K18747 ahf:112794598 169.859