Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151038g00048 ATGCATGCCTTGACTCACTCACTCGAAATAGAAACACTGCATGTACTTCTCTTGAATCCACCTCACTGCAGCTGTGTCTTCCGAAAACAAGGAACACCAATCCACATTCAATCCCTACGGAGGAATGATGTGTACATTAGTTCCGGATTGCAAAAACTTGATTCTTTTACATCAGATCTCTTTCACGCACTCATACTTGCAGGAGTAAATGTTTTAAGGAACTGTCGGTCCTACACTAATGACCTCATATTATCTGGCCCAATCAAAGGGTGCAGAGTTTGTATCATAGTTTTCACAATAGATTATGCTAGTTCAATCATGTGTTTGCAAGAGCTCGTCAAGGTAATGGAGGAGTGTCATCGGAGCAGCACATGTAAGAAGGTTTTGCCAGTCTTCCATTGCTTAGATTCCTCGGATGTACACAATCTGAGCGGTTCTTTTGGAAAAGTTTTCTTGGATACTCTTCAAAGAAACTCAACACATGAAAGCAAGGTGTTGACTTATAGGACTGCACTTCGAGAAGCTGCCGCCATTTCACCCACGTTTCTGCTGGATGCCCGGAATGAAAGCAAAGTTATAGAGGATATTGTTGCGCATGTTACCTCTTTGCTAGATTCAACCGACTTATTCGTTGCGGAGCATCCAGTGGAAGTGAACTCACGTGTCCAAGATTTGATTCAACTCATAAATAATCACAAATCGGATGATGTTCTTATAATAGCTATATGGGGAATGGTGGGGATAGGTAAAACAACAATTGCGAAAGCCCTCTACAACCAAATTAGCCGCAATTTCGAAGAGGAAGTTTGTCCCAAACATCAAGGAAAGGCTGAAGGCTTTGACAACAGTGCGGTATTTCTCGTACTTGATGACGTGAGAAGTGAAAAAGAACTGGAAGTTTTGCCTGTAAGTCCTGAACACATTGGTCCAGGTAGTATAATAATCCTCACAACATGGCGTAAACATGATTGTCTTCACGAGATTGGAGTTAATCATATATATAAAGTGAAAGAAATGGATTATAACAAATGTGTTGAGCTTTTTAGTTGGACCGCATTCAAGAAATCAACTCCTGAAAGAAGTTTTTCTGGGCTTATTAATTATGCAGTTGAATATTCTGATGGATTGCCACTGGCTCTTGTGGCTGTTGGCTCTGCATTATCTGAAAAAAGTATACAAGAGTGGGAGAATGTATTGGATAGCCTCAAAAGATTTCCCCTGCAAGATGTATGCCAAATTTTAAAAGAAAAAATTGAGCCTATTGGATATGAAGAGAAGAAAATGTTTGCCGAACTAGCTTATTTGAAACATCTGCTTATTGTAATGGACCGAAATGATATAAGCAGGATACTACAAGAAGCTGGATATTGTGGGGCACCAATTGCAATATCAATTAAAATGCTTGAAGAGCATAGCCTAGTGTGGTTTGAAGAGGACAAGCTTTGCATGCATCGTTTGCTACAACACATTGGAAGACAAATGTATTTCAAGGAATCATCCATTGAGCGCCAGCAAAGGCCATATGACGTATTCTTGAGCTTTCGAGGCAAAGACACTCGTTCAAAGTTCATCTCACATCTTCATACATCTCTTGAAAATGCCGGTATCTATGTATTCAAGGATGATGATGGGATTCCAAGAGGGGAAAATCTCTCAATCTCACTTCTAAAAGCACTTGGAGAGTCTAAAATTGCTATAGTTATTCTGTCACCGAATTATGCTTTCTCAAGATGGTGTTTGCAAGAGTTGGAAGACATAATGATATGTTATGAAAACAAAACTCAAAAGGTGATCCCCAGAAAAGTAAAACGCAAGGAGCATAGTTGGAGGAAAGCACTAAGTGAAGTTGGGTGCATTGCAGGGTTTGTCACCCAAAAATCCAGGAATAAAAGTGAGGATATTAAGAACATTGTTGAACATGTTACTCGTATGCTAGACATGAAGCAATTGTTCGTCGCAAATCATCCGGTAGGAGTTGAATCTCGTGTTGAAGAGTTATATAGTATGAAAGAGTTAAATGACAATGAATCCATTGAACTTTTTAGCTGGCATGCATTCAAAGAACTAGGTCCGAAAGAAGAGTTTGCTTTACTTGCTAATGAAGTTGCTTCATACTGTGAGGGATTGCCACTGGCTCTTGAAGTGATTGGGTCACATTTGTTTAATAGAGAAGTATATGAATGGAGGAGCGTTTTGGAGAAACTCAAAACTATTCCCCCCAATGATGTACACAAGAAGCTCAGAATAAGTTTTGATGGTCTGAGTGATGATAGAGAGAGGGAAATATTTCTTGATGTGGCATTTTTCTTTATTGGAATGGACAAAAATGAGGTAGTTGATATATTAAATGGCTGTGGGCATTCTGCTGAAATCGGAATAAATGTTCTTATGGAACGATGCCTTGTTACTGTGGACACACAGAGGAAACTTGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCAGAAGTTTGCCAACAAAACCTGAGAAACGGAGTAGGTTGTGGAATCCAGAGGAAGTGCTTAACGTATTATCAAAAGACATGGGAACAAAAGCTATTGAGGGACTTGCTTTGAACCTGCCAAACTCAGTGAATCCAACTCAGTTAAAGACGAAAGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTGCAAATGTGGAACTTGTTGGAGACTTCAAATACCTTCCGGCAGATCTTCGATGGTTGTGTTGGCATGGATGTCCTTCAGAATATACAACTGCAAACTTTGATCAAGCAAATTTAGTTGCTATTGACTTCAAATATAGCAAACTCGAACTAGTATGGAAGAAGGGTCAGATGATGAAGCAGCTAAAAATTCTGAATCTTAGTCATTCTCATCACTTGACACAAACTCCTGACTTTTCAAATTTGCCAAATCTTAAAAAGTTAATCCTCAAATATTGCCCAAAGTTGACTTCAGTTTCTCATACCATTGGACATCTCAAGCAAGTTCAGTTAATCAATTTCAAAGGGTGTTCAAATCTTCGTGTACTTCCAAGAAGCATCTACAAGTTGAAATCTCTCGAAACTCTCATTCTTTCAGGATGTTCATTGATTGATAAGTTAGAAGAAGACATGGAACAGATGGAATCATTGACAACTTTGATGGCAGATAAAACTGCCATAACACAAGTGCCTCATGCACTACTAAGATTGAAGAGCATTGTGTATATTTCTTTGTGTGGCTTTGAAGGATTATGGCGCAATGTGTTTCCTTCAATCATTTTGTCATGGACCGCTCCAACAAATAATTTCTCACCCCAACTGCAATCAGTTATTGACTTATCAAATATTGTTTACTTAATAATACCAAATAGCCATTCTCAAGGTCTATCATCCATCATCAGAGAGCTTCCACAAGTCCAGAATGTTAACCTGGAATGTGGTTCACAATTTCAAATGACAGGAGATGTAGCTTCTGATACTTTTAATGTCACAAACTGCAATGAAATGATAGTAACATCAAGTGCATCATTAGGTGGTAGTTGCAACGAAGGCATCATTCTTGAATCAGAAAATTCTGAGTTCAATTTTAATCCAAATGGGATTGAATTGTTCTATCACGGAGGTGCTTAG 3615 0.3889 MHALTHSLEIETLHVLLLNPPHCSCVFRKQGTPIHIQSLRRNDVYISSGLQKLDSFTSDLFHALILAGVNVLRNCRSYTNDLILSGPIKGCRVCIIVFTIDYASSIMCLQELVKVMEECHRSSTCKKVLPVFHCLDSSDVHNLSGSFGKVFLDTLQRNSTHESKVLTYRTALREAAAISPTFLLDARNESKVIEDIVAHVTSLLDSTDLFVAEHPVEVNSRVQDLIQLINNHKSDDVLIIAIWGMVGIGKTTIAKALYNQISRNFEEEVCPKHQGKAEGFDNSAVFLVLDDVRSEKELEVLPVSPEHIGPGSIIILTTWRKHDCLHEIGVNHIYKVKEMDYNKCVELFSWTAFKKSTPERSFSGLINYAVEYSDGLPLALVAVGSALSEKSIQEWENVLDSLKRFPLQDVCQILKEKIEPIGYEEKKMFAELAYLKHLLIVMDRNDISRILQEAGYCGAPIAISIKMLEEHSLVWFEEDKLCMHRLLQHIGRQMYFKESSIERQQRPYDVFLSFRGKDTRSKFISHLHTSLENAGIYVFKDDDGIPRGENLSISLLKALGESKIAIVILSPNYAFSRWCLQELEDIMICYENKTQKVIPRKVKRKEHSWRKALSEVGCIAGFVTQKSRNKSEDIKNIVEHVTRMLDMKQLFVANHPVGVESRVEELYSMKELNDNESIELFSWHAFKELGPKEEFALLANEVASYCEGLPLALEVIGSHLFNREVYEWRSVLEKLKTIPPNDVHKKLRISFDGLSDDREREIFLDVAFFFIGMDKNEVVDILNGCGHSAEIGINVLMERCLVTVDTQRKLGMHGLLRDMGREIIRRSLPTKPEKRSRLWNPEEVLNVLSKDMGTKAIEGLALNLPNSVNPTQLKTKAFKEMKRLRLLQFANVELVGDFKYLPADLRWLCWHGCPSEYTTANFDQANLVAIDFKYSKLELVWKKGQMMKQLKILNLSHSHHLTQTPDFSNLPNLKKLILKYCPKLTSVSHTIGHLKQVQLINFKGCSNLRVLPRSIYKLKSLETLILSGCSLIDKLEEDMEQMESLTTLMADKTAITQVPHALLRLKSIVYISLCGFEGLWRNVFPSIILSWTAPTNNFSPQLQSVIDLSNIVYLIIPNSHSQGLSSIIRELPQVQNVNLECGSQFQMTGDVASDTFNVTNCNEMIVTSSASLGGSCNEGIILESENSEFNFNPNGIELFYHGGA 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151038g00048 1204 Gene3D Ribonuclease Inhibitor 850 1179 IPR032675 -
Stsc151038g00048 1204 Gene3D - 208 279 IPR027417 -
Stsc151038g00048 1204 Gene3D - 39 207 IPR035897 -
Stsc151038g00048 1204 Gene3D - 505 601 IPR035897 -
Stsc151038g00048 1204 ProSiteProfiles TIR domain profile. 506 645 IPR000157 GO:0007165
Stsc151038g00048 1204 SUPERFAMILY Toll/Interleukin receptor TIR domain 499 620 IPR035897 -
Stsc151038g00048 1204 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Stsc151038g00048 1204 SUPERFAMILY L domain-like 870 1141 - -
Stsc151038g00048 1204 SMART till_3 41 178 IPR000157 GO:0007165
Stsc151038g00048 1204 SMART till_3 507 644 IPR000157 GO:0007165
Stsc151038g00048 1204 Pfam TIR domain 44 202 IPR000157 GO:0007165
Stsc151038g00048 1204 Pfam TIR domain 508 599 IPR000157 GO:0007165
Stsc151038g00048 1204 Coils Coil 1032 1052 - -
Stsc151038g00048 1204 SUPERFAMILY "Winged helix" DNA-binding domain 743 848 IPR036390 -
Stsc151038g00048 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 430 IPR027417 -
Stsc151038g00048 1204 Gene3D - 671 755 IPR042197 -
Stsc151038g00048 1204 Gene3D - 339 423 IPR042197 -
Stsc151038g00048 1204 PRINTS Disease resistance protein signature 1016 1032 - -
Stsc151038g00048 1204 PRINTS Disease resistance protein signature 239 254 - -
Stsc151038g00048 1204 PRINTS Disease resistance protein signature 706 720 - -
Stsc151038g00048 1204 Pfam NB-ARC domain 664 737 IPR002182 GO:0043531
Stsc151038g00048 1204 Pfam NB-ARC domain 286 416 IPR002182 GO:0043531
Stsc151038g00048 1204 Gene3D - 602 653 IPR035897 -
Stsc151038g00048 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 765 IPR027417 -
Stsc151038g00048 1204 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 661 1143 IPR044974 GO:0006952
Stsc151038g00048 1204 SUPERFAMILY Toll/Interleukin receptor TIR domain 42 178 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151038g00048 Stsc-Chr151038 354184 360019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151038g00048 226 499 WRKY Transcription Factor Family AT5G45050 28.339 7.08e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151038g00048 - - ahf:112727920 871.692