Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00061 ATGGAGGCTATCGATTCCAACCCTAACCCTACGCCTCCTCTTCCTTCATCAGACGCACTCAATTCATACGATTCATCCTTGCATCTTCACAATTCCCAACCTCACTCTTCAGATGCTGCTAACACTACCGACACTGCTCCCTCGAACACATCCGAGAACGGCCAGGGAGGTGGCGCCGTCGCTGCTGATGTGAATTTCCCGCCTCAGCTTGCCAAGCCTTTGATATCCGAGAACGGCTTGACCGGAACCACCACCCGCAGTGGCACTGACAAGGACCAATCCGGCGGCGAGGAAGAGACAACCAGCAAGCGCCGACGTAGGAGCCGGTGGGACCCGCAGCCCGAATCCAACGACCAGAGCAACAGTGGCGGTGGAGATGCCGATGCCGGCTCCAAAACGAAGAAGAGGAAGTCGCGGTGGGCGGATGACGATCCGAAGCCAGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCCGAGATTCAAGCTTTGAATAGTAGGCTACTTGAGATTAGTCGAATGTTGCAATCGGGTTTGCCTTTAGATGATCGTCCTGAAGGTGCTCGATCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGGGAGTATCGTGCTCGTGAGAGATTGCAGAAGGAGAGGCAGGAGATTATATCTCAGATTATTAAGAAAAACCCTGCCTTTAAGCCCCCAGCTGATTATAGGCCACCGAAGCTTCAGAAGAAGCTTTATATCCCCATGAAAGAATACCCGGGTTACAATTTCATAGGGCTGATTATTGGCCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGATCAGTCAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGATCCATCGGAGAATGAGGATTTGCATGTTTTAGTGGAGGCAGAGACACCGGAATCGCTTGAAGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTGTTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCAGCCTTAAATGGGACAATCAGGGACGAAGAGTATTGTCGATTGTGTGGTGAACCTGGTCATCGTCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGTGAGGTTGTCTGTAAACATTGTGNNNNNNNNNNCGATGGTGGACATCCAAGCATAGATTGCCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTACTGTTCCTGAATCGGCAACAAAGCAAACCGCTACATTAGCAATTGGTCCTGGCAATTCTGGAAGTAATCCTCCTTGGGCAAACAATAATACTGCTTCAACAGTTAGTACTACTGCACACCCTGGCTTAGGTTCCGCTACCATTAAAAAGGAAATCGATGATACAAATTTGTACATTGGGTATTTGCCACCTACTCTTGATGATGATGGTCTGATCCAACTTTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATCAAGGATCGGGTGTCAGGTTTAAGTAAAGGATATGGATTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCAATTTCGGCCATGAATGGTCAGCGCCTTGAGGGCCGGACCATTGCTGTGAGAGTCGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCATCTTCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAGCAATATGCTGCTGGTGGTCCAATTGGTAGTGCGCCCCCTCCAAGTTATGGTGGTGCACCCGTTCCATGGGGTCCTCCTGCTCCTCCTCCTCCTCCGTATGCTGCTTATGCACCGCCACCTCCTGGCTCAACAATGTATCCTCCTATGCAAGGCCAGCCTATGCCTCCCTATGGTGTTCAATATCCGCCTGTCCAGACAGGCCCTCCTGGTGCCACATCCCAGCCTGCATCCAGTAGTGAAGTTCAGCAGAGTTACCCCCCTGGAGTGCAGTCTGACAATAGTACCACTACTCAGTCTGTACCCTCTATATATGGGAACTCAGTGCCTTCAATGCCTCCACCGCCTCAACCTACTTACCCTGCATCATATGGTTATCCTCCATACTACACTTCCGTTCCTCCACCGCCTCCCCCGTCTGCGCCTGTTCCTGCCTCTACTTCAGAGCAGTCCCACATCGGGAATGTGCCTTGGGCCAGTAATCCTCCAGTACCGCCTCCTGCTTCATCTGCAGAGAAGACAACATATGGTGCAGATCAATCACAGGGACTTGGCAATGTTCCTTGGGCCACAAATCCTCCAATGCCTCCTCCTGCTTCGTCAGCTGCGGATTCAGAATATGAGAAGTTCATGGCAGAGATGAAATGA 2439 0.4982 MEAIDSNPNPTPPLPSSDALNSYDSSLHLHNSQPHSSDAANTTDTAPSNTSENGQGGGAVAADVNFPPQLAKPLISENGLTGTTTRSGTDKDQSGGEEETTSKRRRRSRWDPQPESNDQSNSGGGDADAGSKTKKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCXXXXDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTATLAIGPGNSGSNPPWANNNTASTVSTTAHPGLGSATIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAISAMNGQRLEGRTIAVRVAGKPPQPVVPPGPPASSVPTYPVPSQPLGAYPSQQYAAGGPIGSAPPPSYGGAPVPWGPPAPPPPPYAAYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGATSQPASSSEVQQSYPPGVQSDNSTTTQSVPSIYGNSVPSMPPPPQPTYPASYGYPPYYTSVPPPPPPSAPVPASTSEQSHIGNVPWASNPPVPPPASSAEKTTYGADQSQGLGNVPWATNPPMPPPASSAADSEYEKFMAEMK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00061 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 560 IPR000504 GO:0003723
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 705 741 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 16 56 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 446 474 - -
Stsc151037g00061 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 567 IPR000504 GO:0003723
Stsc151037g00061 812 Gene3D K Homology domain, type 1 239 370 IPR036612 GO:0003723
Stsc151037g00061 812 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 247 373 IPR036612 GO:0003723
Stsc151037g00061 812 ProSiteProfiles Zinc finger CCHC-type profile. 369 383 IPR001878 GO:0003676|GO:0008270
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 129 146 - -
Stsc151037g00061 812 Gene3D - 161 238 IPR047086 -
Stsc151037g00061 812 SMART kh_6 247 339 IPR004087 GO:0003676
Stsc151037g00061 812 Pfam Splicing factor 1 helix-hairpin domain 136 243 IPR032570 -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 566 812 - -
Stsc151037g00061 812 SUPERFAMILY RNA-binding domain, RBD 486 578 IPR035979 GO:0003676
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 611 661 - -
Stsc151037g00061 812 Gene3D - 458 571 IPR012677 -
Stsc151037g00061 812 SMART rrm1_1 490 563 IPR000504 GO:0003723
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 664 704 - -
Stsc151037g00061 812 Pfam KH domain 262 335 IPR004088 GO:0003723
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 568 585 - -
Stsc151037g00061 812 FunFam splicing factor-like protein 1 469 571 - -
Stsc151037g00061 812 ProSiteProfiles Type-1 KH domain profile. 262 334 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 91 113 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 1 154 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 770 785 - -
Stsc151037g00061 812 PANTHER RNA-BINDING PROTEIN RELATED 92 611 IPR045071 -
Stsc151037g00061 812 FunFam splicing factor-like protein 1 239 367 - -
Stsc151037g00061 812 CDD KH-I_BBP 246 339 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 183 202 - -
Stsc151037g00061 812 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00061 Stsc-Chr151037 433543 437934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00061 489 678 Eukaryotic Initiation Factors Gene Family AT3G16380 27.670 5.87e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00061 K13095 - gmx:100800982 1103.58