Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00053 ATGGCTCGTGGAAGGGTTCAGCTGAAGAGAATAGAAAACCCGGTGCACAGACAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTATCCTTTGCGATGCTGAAATTGGCCTCGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGGTGATAGAGAGGTACATGAAGTTCAACGGGGCGGCTCAGCCTGAAGAACCACCTATTACTGAACCGCATCATCCTCTTGATGCTAAAGAGGAAGCGGATGTGCTGAAACAGGAAATTGAAACATTGCAAAAGGGCATCAGTTATTTGTTTGGAGGAGGAATTGGAACAATGACAATGGATGATTTACATGTCTTAGAGAAGAATCTTGAGACTTGGATTTATCATATTCGCTCAATGAAGTTTGCATATGCACTTCAGATGAATCTCATGTTACAAGAAATTCAAGATCTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGATAAGATTTTGGAGAATACAACTGCATTTACTAACTTTGCTCCATTTGCTACTGACTCAACTTACCCACTAACTATACAAGATGGGATTTTTCCAGCTCTAGGAAATGTACTTGGCTAA 651 0.4316 MARGRVQLKRIENPVHRQVTFCKRRAGLLKKAKELSILCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFNGAAQPEEPPITEPHHPLDAKEEADVLKQEIETLQKGISYLFGGGIGTMTMDDLHVLEKNLETWIYHIRSMKFAYALQMNLMLQEIQDLRDKEGTLKAANKFLHDKILENTTAFTNFAPFATDSTYPLTIQDGIFPALGNVLG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00053 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Stsc151037g00053 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Stsc151037g00053 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 Pfam K-box region 92 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151037g00053 216 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc151037g00053 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc151037g00053 216 ProSiteProfiles K-box domain profile. 90 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151037g00053 216 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00053 Stsc-Chr151037 357253 361484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00053 1 208 MADS-box Gene Family AT1G71692 60.465 1.04e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151037g00053 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00053 - - gmx:100783345 299.671