Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00052 ATGGCTCGTGGAAGGGTTCAGCTGAAGAGAATAGAAAACCCGGTGCACAGACAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTATCCTTTGCGATGCTGAAATTGGCCTCGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGGTGATAGAGAGGTACATGAAGTTCAACGGGGCGGCTCAGCCTGAAGAACCACCTATTACTGAACCGCATCATCCTCTTGATGCTAAAGAGGAAGCGGATGTGCTGAAACAGGAAATTGAAACATTGCAAAAGGGCATCAGTTATTTGTTTGGAGGAGGAATTGGAACAATGACAATGGATGATTTACATGTCTTAGAGAAGAATCTTGAGACTTGGATTTATCATATTCGCTCAATGAAGATGAATCTCATGTTACAAGAAATTCAAGATCTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGATAAGGATCAAATTGTTTATATTCCAACCCATCGGTTACGATCCAATAATTGTCCTTGTCTCCATGAGTTGAGTTGGATTGGGCTCCAAGAAGACAACACCAAAAACTATTTCTAG 630 0.4365 MARGRVQLKRIENPVHRQVTFCKRRAGLLKKAKELSILCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFNGAAQPEEPPITEPHHPLDAKEEADVLKQEIETLQKGISYLFGGGIGTMTMDDLHVLEKNLETWIYHIRSMKMNLMLQEIQDLRDKEGTLKAANKFLHDKDQIVYIPTHRLRSNNCPCLHELSWIGLQEDNTKNYF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00052 209 ProSiteProfiles K-box domain profile. 90 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151037g00052 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 150 - -
Stsc151037g00052 209 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Stsc151037g00052 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151037g00052 209 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc151037g00052 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc151037g00052 209 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00052 Stsc-Chr151037 356799 361484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00052 1 173 MADS-box Gene Family AT1G71692 65.730 9.79e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151037g00052 K-box 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00052 - - gmx:100783345 278.1