Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00048 ATGATGGAGAATATGAATAGTTATTGTCAAGTTCCCCCGGGGTTTAGATTCCACCCCACAGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAATTCAAAGAAGATTGAGCTTGATGTAATCAAAGATGTTGACCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAGGAGGAAAACGAGTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACAACAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCCATATATTCAAAGCACGATCTTATTGGGATGAGAAAGACGCTAGTCTTCTACAAAGGCAGAGCCCCTAATGGACAAAAATCCGACTGGATCATGCACGAATATCGCCTTGAAACCGACGAGAACGCAGCACCTCAGGAAGAAGGTTGGGTTGTGTGTAGAGTGTTCAAGAAGAGAGTAACCACCATGCGTAAATTGATTAGTAGTGATCATCATCATCATCATAATGATGATTCTTCTTGTTGGTATGATGATCAAGAATTCATGATGATGGAGTCACCACCAAAGCAGAATCAGCAACAACAATCTTCTGTTCTTCTTCATCATCATCATCATCATCAATCCAATTTGATGCAGCAGCTACCGCCATATCCTCTCATCAAGAAAGAGCTTCTTCACCCGTCGTCGTCGTCGTCGTCATACCCCTTCCTTCAGCTTCCACTCTTAGAGTCTCCAAAACTACTCCTTCATCAACAACAACAATCTGCTTCTGCTGCTGCATCTTCTAATACTATTAATAATGAATTCATGGCACCACCAATAATTGGAGGAGGAGGAGGAGAATTCTTGAATAATGAACAACAAGAAATGGGAGTTCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAGCTTAGTCAAGATCATCATCATGATGGATCCTGTAATAGTAGCCATGATATTATTGTACAAGATCATCATCTCACACAGGAAATTGTTATGGTGCCTACTACTCAAAATGGTGCTGCTGCATCTCCATCAAACACCCTCATCACCTCCCCAATTGATTTGTGGAAATAG 1110 0.4126 MMENMNSYCQVPPGFRFHPTDEELVDYYLRKKVNSKKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQEEGWVVCRVFKKRVTTMRKLISSDHHHHHNDDSSCWYDDQEFMMMESPPKQNQQQQSSVLLHHHHHHQSNLMQQLPPYPLIKKELLHPSSSSSSYPFLQLPLLESPKLLLHQQQQSASAAASSNTINNEFMAPPIIGGGGGEFLNNEQQEMGVLDWRVLDKFVASQLSQDHHHDGSCNSSHDIIVQDHHLTQEIVMVPTTQNGAAASPSNTLITSPIDLWK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00048 369 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Stsc151037g00048 369 MobiDBLite consensus disorder prediction 196 216 - -
Stsc151037g00048 369 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Stsc151037g00048 369 FunFam NAC domain-containing protein 20 164 - -
Stsc151037g00048 369 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Stsc151037g00048 369 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Stsc151037g00048 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00048 Stsc-Chr151037 335922 337512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00048 5 369 NAC Transcription Factor Family AT1G12260 53.784 1.93e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151037g00048 NAM 9.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00048 - - gmx:100809525 379.793