Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00047 ATGGGGAAAACATTCCTGACATTGTTATTACTGTCATCAATTTTCACAATAGCAGCATCAAGAAAGAGATCATCATCATCTAATGAAAAATCAAACATAGATTGGTGGTGCAACAGAACACCACACCCTGCACCATGCAAGTTCTACATGAGGCAAAGCCATTACAACCCTTACCACAGGTTGAAGCACAGAACCGATTTCCGTTCCATTCTCCTCAACCTGGCTCTAGACCAAGCCCTCCTCATGCAACAACATGCACACTCTTTGCAAAACAGTAACACCACTATGAAGCAGCAAACGGTGTTTCAAGATTGCTTGAAGCTCTATGATAACACCGTGTTCCACCTCAACCGCACCATTCAAGGCCTCAGATACCATCAAACAAGAAACTGTTCTGCTTTCGATGGACAAACATGGCTCAGCACGGCCCTCACCAATATTGTGACTTGCAAGAAATGGGCCAATGCGATGAAGATCCAGGGCCTCACCGATTCTTCATTACCCGGGATCAATGTCTCCGAGATCATAAGCAATACTCTGGCTGTGAACTCTGTGTTCTTGAAGTATCAGAAGAATCTTTTAACGGAGGACTACTCGGCAGAGGCGTTTCCGAGCTGGTTCTCGGCCACGGACAGGAGGCTGCTGCAGAGTTCAGGTGTGAAGGCGAACCTCGTGGTGGCGAAAGACGGTTCGGGGCATTTCAAGACCGTGCAGGCCGCGATCGATGCGGCGGCGAAGAGAAGGTCGAAGACGAGGTTTGTAATTCATGTGAAGAAGGGGGTTTATAGAGAGAATATTGAGGTTGATAAGACGAATGATAATATCATGCTGGTCGGTGATGGAATGAGGAACACCATTATTGCAAGTGGAAGAAGCGTTCAACAAGGCTACACCACTTATAGCTCTGCCACTGCAGGAATTGATGGGCCTCACTTCATTGCACGTGACATCTGCTTCATAAACACGGCGGGCCCACTCAAGGGCCAAGCCGTGGCTCTCCGATCCGCCTCTGATCTCTCTGTGTTCTACCGCTGCTCCATAATTGGCTACCAAGACACCCTCATGGCTCACGCCCAACGACAATTCTACAGAGGCTGTTACATCTACGGTACTGTTGACTTCATCTTTGGCAACGCCGCCGTTGTTTTCCAAAACTGCGTCATCCTTGTCAGAAAGCCCAACAATGGCCAGGCCAACATGATCACGGCCCAAGGTCGAGGCGACCCGTTCCAAAACACCGGAATCTCATTCCACAATTGTCAGATACGGGCCGCACCCGACCTCAAGCCCGTTGTTAACAAATATAACACGTTCTTGGGCCGGCCTTGGCAGCAATACTCAAGAGTTGTAGTTATGAAAACCTACATAGACAGCTTGGTAAGCCCAATGGGCTGGTCTCCATGGGGCAACACTAATTTTGCTCAGAGTACTTTGTACTATGGAGAGTATAAGAATTTTGGGCCTGGATCTTCCACTAAGAACAGGGTCCGGTGGCCTGGATATCATGTTTTGACAAGCCCGGCCCAGGCTACACCATTCACAGTAAACAGCCTCCTTGCTGGCGGCACATGGTTACCGGCTACCGGCGTGCCATTTACGGCTGGCCTTTGA 1611 0.4922 MGKTFLTLLLLSSIFTIAASRKRSSSSNEKSNIDWWCNRTPHPAPCKFYMRQSHYNPYHRLKHRTDFRSILLNLALDQALLMQQHAHSLQNSNTTMKQQTVFQDCLKLYDNTVFHLNRTIQGLRYHQTRNCSAFDGQTWLSTALTNIVTCKKWANAMKIQGLTDSSLPGINVSEIISNTLAVNSVFLKYQKNLLTEDYSAEAFPSWFSATDRRLLQSSGVKANLVVAKDGSGHFKTVQAAIDAAAKRRSKTRFVIHVKKGVYRENIEVDKTNDNIMLVGDGMRNTIIASGRSVQQGYTTYSSATAGIDGPHFIARDICFINTAGPLKGQAVALRSASDLSVFYRCSIIGYQDTLMAHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRKPNNGQANMITAQGRGDPFQNTGISFHNCQIRAAPDLKPVVNKYNTFLGRPWQQYSRVVVMKTYIDSLVSPMGWSPWGNTNFAQSTLYYGEYKNFGPGSSTKNRVRWPGYHVLTSPAQATPFTVNSLLAGGTWLPATGVPFTAGL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00047 536 SMART PMEI_2 28 182 IPR006501 GO:0004857
Stsc151037g00047 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599|GO:0042545
Stsc151037g00047 536 Pfam Plant invertase/pectin methylesterase inhibitor 32 181 IPR006501 GO:0004857
Stsc151037g00047 536 Gene3D - 217 536 IPR012334 -
Stsc151037g00047 536 CDD PMEI-like_3 35 188 - -
Stsc151037g00047 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 186 IPR035513 -
Stsc151037g00047 536 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Stsc151037g00047 536 SUPERFAMILY Pectin lyase-like 218 535 IPR011050 -
Stsc151037g00047 536 FunFam Pectinesterase 217 536 - -
Stsc151037g00047 536 NCBIfam pectinesterase inhibitor domain 4 184 IPR006501 GO:0004857
Stsc151037g00047 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 187 IPR035513 -
Stsc151037g00047 536 ProSitePatterns Pectinesterase signature 1. 249 268 IPR018040 -
Stsc151037g00047 536 PANTHER PECTINESTERASE 15 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00047 Stsc-Chr151037 322768 325118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00047 31 536 Carbohydrate Esterase AT5G51500 58.071 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00047 K01051 - gmx:100816908 759.985