LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151037g00047	ATGGGGAAAACATTCCTGACATTGTTATTACTGTCATCAATTTTCACAATAGCAGCATCAAGAAAGAGATCATCATCATCTAATGAAAAATCAAACATAGATTGGTGGTGCAACAGAACACCACACCCTGCACCATGCAAGTTCTACATGAGGCAAAGCCATTACAACCCTTACCACAGGTTGAAGCACAGAACCGATTTCCGTTCCATTCTCCTCAACCTGGCTCTAGACCAAGCCCTCCTCATGCAACAACATGCACACTCTTTGCAAAACAGTAACACCACTATGAAGCAGCAAACGGTGTTTCAAGATTGCTTGAAGCTCTATGATAACACCGTGTTCCACCTCAACCGCACCATTCAAGGCCTCAGATACCATCAAACAAGAAACTGTTCTGCTTTCGATGGACAAACATGGCTCAGCACGGCCCTCACCAATATTGTGACTTGCAAGAAATGGGCCAATGCGATGAAGATCCAGGGCCTCACCGATTCTTCATTACCCGGGATCAATGTCTCCGAGATCATAAGCAATACTCTGGCTGTGAACTCTGTGTTCTTGAAGTATCAGAAGAATCTTTTAACGGAGGACTACTCGGCAGAGGCGTTTCCGAGCTGGTTCTCGGCCACGGACAGGAGGCTGCTGCAGAGTTCAGGTGTGAAGGCGAACCTCGTGGTGGCGAAAGACGGTTCGGGGCATTTCAAGACCGTGCAGGCCGCGATCGATGCGGCGGCGAAGAGAAGGTCGAAGACGAGGTTTGTAATTCATGTGAAGAAGGGGGTTTATAGAGAGAATATTGAGGTTGATAAGACGAATGATAATATCATGCTGGTCGGTGATGGAATGAGGAACACCATTATTGCAAGTGGAAGAAGCGTTCAACAAGGCTACACCACTTATAGCTCTGCCACTGCAGGAATTGATGGGCCTCACTTCATTGCACGTGACATCTGCTTCATAAACACGGCGGGCCCACTCAAGGGCCAAGCCGTGGCTCTCCGATCCGCCTCTGATCTCTCTGTGTTCTACCGCTGCTCCATAATTGGCTACCAAGACACCCTCATGGCTCACGCCCAACGACAATTCTACAGAGGCTGTTACATCTACGGTACTGTTGACTTCATCTTTGGCAACGCCGCCGTTGTTTTCCAAAACTGCGTCATCCTTGTCAGAAAGCCCAACAATGGCCAGGCCAACATGATCACGGCCCAAGGTCGAGGCGACCCGTTCCAAAACACCGGAATCTCATTCCACAATTGTCAGATACGGGCCGCACCCGACCTCAAGCCCGTTGTTAACAAATATAACACGTTCTTGGGCCGGCCTTGGCAGCAATACTCAAGAGTTGTAGTTATGAAAACCTACATAGACAGCTTGGTAAGCCCAATGGGCTGGTCTCCATGGGGCAACACTAATTTTGCTCAGAGTACTTTGTACTATGGAGAGTATAAGAATTTTGGGCCTGGATCTTCCACTAAGAACAGGGTCCGGTGGCCTGGATATCATGTTTTGACAAGCCCGGCCCAGGCTACACCATTCACAGTAAACAGCCTCCTTGCTGGCGGCACATGGTTACCGGCTACCGGCGTGCCATTTACGGCTGGCCTTTGA	1611	0.4922	MGKTFLTLLLLSSIFTIAASRKRSSSSNEKSNIDWWCNRTPHPAPCKFYMRQSHYNPYHRLKHRTDFRSILLNLALDQALLMQQHAHSLQNSNTTMKQQTVFQDCLKLYDNTVFHLNRTIQGLRYHQTRNCSAFDGQTWLSTALTNIVTCKKWANAMKIQGLTDSSLPGINVSEIISNTLAVNSVFLKYQKNLLTEDYSAEAFPSWFSATDRRLLQSSGVKANLVVAKDGSGHFKTVQAAIDAAAKRRSKTRFVIHVKKGVYRENIEVDKTNDNIMLVGDGMRNTIIASGRSVQQGYTTYSSATAGIDGPHFIARDICFINTAGPLKGQAVALRSASDLSVFYRCSIIGYQDTLMAHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRKPNNGQANMITAQGRGDPFQNTGISFHNCQIRAAPDLKPVVNKYNTFLGRPWQQYSRVVVMKTYIDSLVSPMGWSPWGNTNFAQSTLYYGEYKNFGPGSSTKNRVRWPGYHVLTSPAQATPFTVNSLLAGGTWLPATGVPFTAGL	536

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151037g00047	536	SMART	PMEI_2	28	182	IPR006501	GO:0004857
	Stsc151037g00047	536	Pfam	Pectinesterase	223	521	IPR000070	GO:0030599\|GO:0042545
	Stsc151037g00047	536	Pfam	Plant invertase/pectin methylesterase inhibitor	32	181	IPR006501	GO:0004857
	Stsc151037g00047	536	Gene3D	-	217	536	IPR012334	-
	Stsc151037g00047	536	CDD	PMEI-like_3	35	188	-	-
	Stsc151037g00047	536	Gene3D	Invertase/pectin methylesterase inhibitor family protein	27	186	IPR035513	-
	Stsc151037g00047	536	ProSitePatterns	Pectinesterase signature 2.	368	377	IPR033131	-
	Stsc151037g00047	536	SUPERFAMILY	Pectin lyase-like	218	535	IPR011050	-
	Stsc151037g00047	536	FunFam	Pectinesterase	217	536	-	-
	Stsc151037g00047	536	NCBIfam	pectinesterase inhibitor domain	4	184	IPR006501	GO:0004857

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151037g00047	Stsc-Chr151037	322768	325118	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151037g00047	31	536	Carbohydrate Esterase	AT5G51500	58.071	0.0	603

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151037g00047	K01051		-	gmx:100816908	759.985

Showing 1 to 1 of 1 entries