Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00018 ATGGGTTCTTCTAATAATGGTGGTGTGCCACCAGGGTTTCGATTTCATCCCACCGATGAGGAGTTGCTTCATTACTACTTGAAGAAGAAGGTTTCGTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACCTCAACAAGATGGAGCCTTGGGACCTGCAAGAAAGATGCAGAATAGGTTCAACACCGCAAAACGAGTGGTACTTCTTCAGCCACAAGGATAGAAAGTACCCAACAGGTTCAAGGACCAACCGAGCAACCAACGCAGGGTTCTGGAAAGCCACCGGTAGAGACAAGTGCATAAGGAACACCTACAAGAAGATTGGGATGAGAAAGACACTTGTTTTCTACAAAGGTAGAGCCCCTCACGGCCAAAAGACTGATTGGATCATGCACGAATATCGCCTTGAAGATTCTAATGATCCTCAAGCAAATTCCAATGAAGATGGATGGGTGGTGTGCAGGGTGTTCAAGAAGAAGAACTTATTCAAGATTGGAAACGAAGGAGGTGGCGGGTCCACACATACCTCATCGGATCAGCAACTCAACAACTCAACGGCCACCAATGCTCGTTCATTCATGCAAAGTAGGGAGAACCACTACCTACTTCATCATCATCAGCAAAACCCTAGGAATGGGAACCCATCATCTTCATCCTCAGGCTTTGATGAGCTCGATAAACCCGAACTCGGTCTCCATCACTATCCTCACATGCAAAACCCACACTATTCCCTCTTCCATCACTCCCAACAACTTCTTCAACACCAGGCCCACAAGCCCATCGTCTATGATTACTCTTATGCACCTGCAATTCCCTCCGACCCTCCTGTCATGGCTAAGCAGCTCATGACAAACCCTAGAGCCTGCGATAGCGGTGGCAGTGAGGGCCTGAGGTACCAGCAGGTTTCCGAGCCTGGTATGGAGGTTGGATCATGTGAACAAGCCCAGGAAATGGGTGCGGGTGCGGCCGCGGCCGCGAGAGGAGAAGGAATGAATGAATGGGGTGTGCTTGATAGGCTTGTGACCTCCCACCTTGGAAATGAAGATTCAGGCAACAAAGGGATTAGGTTTGAAGATGCAAATCCACACCAGATTAACCAGCTTTCTTTGAGGGGAGAGATGGATTTCTGGGGCTATGGAAAACAATAA 1152 0.4826 MGSSNNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDSNDPQANSNEDGWVVCRVFKKKNLFKIGNEGGGGSTHTSSDQQLNNSTATNARSFMQSRENHYLLHHHQQNPRNGNPSSSSSGFDELDKPELGLHHYPHMQNPHYSLFHHSQQLLQHQAHKPIVYDYSYAPAIPSDPPVMAKQLMTNPRACDSGGSEGLRYQQVSEPGMEVGSCEQAQEMGAGAAAAARGEGMNEWGVLDRLVTSHLGNEDSGNKGIRFEDANPHQINQLSLRGEMDFWGYGKQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00018 383 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Stsc151037g00018 383 MobiDBLite consensus disorder prediction 206 231 - -
Stsc151037g00018 383 MobiDBLite consensus disorder prediction 207 224 - -
Stsc151037g00018 383 FunFam NAC domain-containing protein 18 164 - -
Stsc151037g00018 383 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Stsc151037g00018 383 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Stsc151037g00018 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 220 - -
Stsc151037g00018 383 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00018 Stsc-Chr151037 120640 122766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00018 3 379 NAC Transcription Factor Family AT1G33280 51.928 1.95e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151037g00018 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00018 - - adu:107477630 731.095