Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00013 ATGGTGGTCAACGAGAGACCTACTAAGAGGATGAAGAGAAGAGTAACCGCTGATCTCTACGACTTTCTCACTTTCCCTTCCGCCGCCGTGGCTTCCACCGACTCACCCTTCCGCAACTGTGTACAGCGGTTCCTGGCAGAACACGGTCGCATAACGTTTCCGCCTTCACTGTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCTGATCTCTCGCCTGCCGTGGTCACGCTTGACATTGTCGAGGAAGATGTCACGCGCTCCCGAAGTTCAGTGTACTGCGACCAGTGTCGCGTAGTTGGGTGGAGCGGTCATCCCGTCTGTCGAAAGCGATACCATTTCATTATCAGGGCTGCCAGTAACTCCGTTGAGTCTTACCAAAGACCTTGTTCAAGATGTGCAAGTCTTGTCCAACTATCTGAACCAAGGTGTAAATCGTGTGACTTTTCCATCACTGTGGATGATCTTGAGGATTGGGTGTATAATCAAATCGAAGATAACACCCATCTTCTCCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGGTGGTGGCTCAAAGCTGCTCTCTGGATCTGATATTATGGGGTTTTGGGATAGGCTTTGTTCAGCAATTTCTGTAAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGATTGGAATATCGGGTGCTTCATGCAATCACCAATAGCCGTTCGTGGTATGGCAATTGGGGTTATGAATTTGGGAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAATGCAGTGAATACCCTGTCAGACATGCCCTTGTCCTCATTTTCATTCCAGGGACGTGGACCACGAAACCGCCTTCAGTGTGTTATTTCTCTCTACCAGTCATTGGCTGAAGCTGAACTTCTAACAATCAAAGATCTCTTCTCCTTTTTGTTGACATTGGTTCACGAATTTCGCAAGCCCATGACCAAAAAAGTATCCAAACAGGATGAAGGCTCCAACAGATGTAATTTGTTGTGTGCTTGGACAAGAAATAATGTTGAGGATGTGCAACAGGCTTTGATTAAGGTATTACTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTCGCAAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACAGTCTTAAGCACTTGGAAGGGAAATTAGCTGCCAATGGAATGGTGGTGGCTACACGATGCAATCCTGTTACCAGTGCTATAGAATTCAGGCTAGAACCGTTCCGTAATGGTTTTACAAAAAATTCAAGCCATCCATCAGAAGAGCAAGTAATATCTGATCTGGCATATTTATTTGATTCAATAATTCACCCGGATAAAATGGTGAGTTATAGACCAAAGGTTATGAGGAGAAGTGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGAAGTTTGTGAAGGAGTACAAGCCAGTGGAAGTGGCCATTGAACGGCCCCCGGTCATTAGATTGTGGTGTCAAGTTGAGCTTTCTGATCAGCCGAAAGATGATCCATCTCCACCTCCAGAACTAATCGTGTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGTGCCTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCCGAGGAAGTGATAGGCTATGGGTCTCTTAGTGACTCGCTCACCTTAAAATTCCTGCTTGGAACAAGCGCGATGGTGAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGCCTAAGCCGCTTCCGTATGGAGAGGGGTACAGAGACATGGAAAGTTGACTGCACATGTGGGGCTAAGGATGACGATGGAGAAAGAATGTTAGCATGTGATACTTGTAGTGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCATACCGCCGGGGAGCTGTGAAGTTGCCAGACTCTGGTGTTGAAGCTAACAAGACTTGTAAATTGCCGAATGCTTCTTGCAGAGATGAAGCGGCAACAGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGTTAG 2139 0.4647 MVVNERPTKRMKRRVTADLYDFLTFPSAAVASTDSPFRNCVQRFLAEHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNSVESYQRPCSRCASLVQLSEPRCKSCDFSITVDDLEDWVYNQIEDNTHLLHGVVHSNGYGHLLTLNGRGGGSKLLSGSDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSRSWYGNWGYEFGNGSYALTQDAYQNAVNTLSDMPLSSFSFQGRGPRNRLQCVISLYQSLAEAELLTIKDLFSFLLTLVHEFRKPMTKKVSKQDEGSNRCNLLCAWTRNNVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVATRCNPVTSAIEFRLEPFRNGFTKNSSHPSEEQVISDLAYLFDSIIHPDKMVSYRPKVMRRSVADSARKLLDCKKFVKEYKPVEVAIERPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMYKRFQAEEVIGYGSLSDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWKVDCTCGAKDDDGERMLACDTCSVWQHTRCAGIDNSDAIPSKFVCLRCLSSYRRGAVKLPDSGVEANKTCKLPNASCRDEAATDCAAVACNITVDFGVR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00013 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 667 - -
Stsc151037g00013 712 Pfam PHD-finger 617 663 IPR019787 -
Stsc151037g00013 712 SUPERFAMILY FYVE/PHD zinc finger 606 664 IPR011011 -
Stsc151037g00013 712 CDD PHD_MMD1_like 616 661 - -
Stsc151037g00013 712 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
Stsc151037g00013 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 667 IPR013083 -
Stsc151037g00013 712 SMART PHD_3 616 662 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00013 Stsc-Chr151037 88010 91114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00013 80 661 PHD Transcription Factor Family AT5G22260 27.742 7.58e-85 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc151037g00013 PHD 3.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00013 K26271 - gmx:100780558 1153.66