Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00008 ATGTCCATAACCGAGGAAACTCACAGACCCGACCCATCCGCTAAACGGGCCACCAAGAAACGTTCCCGCCAGCCCGACAACGCATTCCGCGGCGTTCGAAAACGAAGCTGGGGACGCTACGTCTCCGAGATTAGAATGCCCGGCCAGAAAACCCGCGTATGGCTCGGCTCATTCGGCTCCCCTGAGATGGCGGCTCGTGCATACGACTCCGCCGCTTTCTTCCTCAAAGGAAACTCCGCCACTCTCAATTTTCCCGACCTCGTTCACTCTCTCCCTCGCCCTCTGTCTTCGTCCAGGCGTGACATACAATCGGCGGCAGCCAAAGCGGCCCTCGAGGTGGCGGATGTACGGATCGGGCTTGAACCGACCCGGTCCCCCGGGAAGGCTGATTCGGTGGAGTGGTGGGAAGGTTTGTTGGAAGAAGAGGAAGATTTGAAAGAATGTGGACTTATGAATATGAGCATGAGTCCTGTTGGAGAATTGACATGGAGCGAAGTGTTCAATTTCAATGATGACCTTTTCTTATTCTCCTAA 534 0.5506 MSITEETHRPDPSAKRATKKRSRQPDNAFRGVRKRSWGRYVSEIRMPGQKTRVWLGSFGSPEMAARAYDSAAFFLKGNSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAALEVADVRIGLEPTRSPGKADSVEWWEGLLEEEEDLKECGLMNMSMSPVGELTWSEVFNFNDDLFLFS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00008 177 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Stsc151037g00008 177 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Stsc151037g00008 177 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Stsc151037g00008 177 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Stsc151037g00008 177 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Stsc151037g00008 177 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Stsc151037g00008 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 126 - -
Stsc151037g00008 177 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Stsc151037g00008 177 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Stsc151037g00008 177 MobiDBLite consensus disorder prediction 1 29 - -
Stsc151037g00008 177 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00008 Stsc-Chr151037 56692 57947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00008 15 110 AP2-EREBP Transcription Factor Family AT5G25810 61.458 1.99e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151037g00008 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00008 K09286 - gmx:100783790 169.474