Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151037g00002 ATGACTCCGGTGAATTTGGCAGGGCAGTTCGGAGACACGACATACACCAAGGTTTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTACTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCTAAAGGCTACGGTTTTGTCACGTTTCGCGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCAGTAATTGATGGAAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAAGTGGGAGGAACTTTAGGGTAATGGGGTCTTTCCAGACAGGGTTTGGAGGGGGAGTGGGATCAGCTTTTCCATCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCATATAACCTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCCACGAGCTACTATAGTGTGTATGGAGGTGCAGCAACAGCACAGTACCCGGTTTATGGAACGGGGCATGCTGGAGGGATGATGACGGGGGCTGGGGCTGCGGCAGCAGCGGCGGCGTTTTATCCGTATCTTCAGTACGGAGGAGAAGGGAGTGGGGGAGGTGGGTCAAGCGGGCAGGGATATGGTGTGAATTATGGACCTCATCAGGTGTTTCAGTATTCTCCTATTGCTTCAACCGGTGGCTATGCTCAGCATTATGCAACTCCCATGTCCCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTTGCTGTGCCGCAGGCGTGA 810 0.5136 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGSGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGHAGGMMTGAGAAAAAAAFYPYLQYGGEGSGGGGSSGQGYGVNYGPHQVFQYSPIASTGGYAQHYATPMSLAPSPALQSVCFAVPQA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151037g00002 269 SMART rrm1_1 17 89 IPR000504 GO:0003723
Stsc151037g00002 269 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Stsc151037g00002 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Stsc151037g00002 269 PANTHER BOULE-RELATED 6 246 - -
Stsc151037g00002 269 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Stsc151037g00002 269 Gene3D - 7 112 IPR012677 -
Stsc151037g00002 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Stsc151037g00002 269 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151037g00002 Stsc-Chr151037 11252 15990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151037g00002 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 4.69e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151037g00002 - - aip:107629746 431.409