LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151036g00025	ATGTCGTACCGCCCTACCGCAAACTCAAGGACCGATGTCCGCCGGAGCCGCTACAAGGTGGCTGTGGACGCCGATGAGGGTCGCCGGCGCCGAGAAGACACCATGGTCGAGATCAGGAAGAACCGCAGGGAAGAGAGCTTGCAGAAGAAGCGGAGAGAGGGCCTTCAACCACAGCAGATTCCCGCTTCTGCACAATCCACTGTGTTAGAGAAGAGGTTGGAACTCCTGCCTACGATGGTTGCTGGTGTTTATTCCGCTGATAATAGCCTGCAGCTGGAAGCAACAACTCAGTTCCGGAAGTTGCTTTCCATTGAGCGCTGTCCGCCGATTGAGGAGGTTATACAGGCTGGTGTGGTTTCTCGCTTTGTTGAATTTCTTTCGAGGGATGACTTCCCCCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCTATTTTTGTAAGGCTCCTTGCTTCTCCCAGTGATGATGTCCGTGAACAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGGGATTCTCCCAGATGCCGTGATCTTGTACTCAGTCATGGTGCTCTGCTTCCTCTGTTGGCACAATTGAATGAACATGCCAAACTTTCTATGCTTAGGAATGCTACCTGGACACTCTCAAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACAGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTCTGTCCCCGGCTAGTTGAGCTTTTAACGCACCCATCCCCTTCAGTTCTAATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACAGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAAGCTCTTTCTTGTCTTCTTACTCTCTTGTCTGGTAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGTAATAAGCAGCAGATACAGGCTGTAATCGAGTCTAATATAATTGGTCCTTTGGTCAACCTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATATCAAATGCTACATCTGGTGGATCTCATGAACAACTCAAGTACCTGGTAAGCCAAGGGTGTATCAAGCCCTTGTGCGATCTTCTTATCTGTCCTGATCCTAGAATTGTGACAGTTTGTCTGGAAGGACTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAGAATATGGGCAATACCGGTGATGTGAATCTATATGCCCAAATGATTGACGATGCAGAGGGTTTGGAGAAAATCGAGAATCTCCAGAGTCATGATAACACCGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACATACTGGTTGGAGGAAGATGACGAGACTATGCCTCCAGGGGATGGTTCCCNNNNNNNNNNCAACTTTGGTGGCTCTGATGGTCCTGCTGTGCCACCTGGTGGATTCAACTTCTAA	1596	0.4643	MSYRPTANSRTDVRRSRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASAQSTVLEKRLELLPTMVAGVYSADNSLQLEATTQFRKLLSIERCPPIEEVIQAGVVSRFVEFLSRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLTHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALSCLLTLLSGNYKKSIKKEACWTISNITAGNKQQIQAVIESNIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDGSXXXXNFGGSDGPAVPPGGFNF	531

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151036g00025	531	MobiDBLite	consensus disorder prediction	500	531	-	-
	Stsc151036g00025	531	FunFam	Importin subunit alpha	13	52	-	-
	Stsc151036g00025	531	Pfam	Importin beta binding domain	14	96	IPR002652	GO:0006606\|GO:0061608
	Stsc151036g00025	531	ProSiteProfiles	IBB domain profile.	1	60	IPR002652	GO:0006606\|GO:0061608
	Stsc151036g00025	531	PIRSF	Importin_alpha	5	531	IPR024931	GO:0005737\|GO:0006606\|GO:0061608
	Stsc151036g00025	531	Gene3D	-	75	497	IPR011989	-
	Stsc151036g00025	531	SMART	arm_5	317	358	IPR000225	GO:0005515
	Stsc151036g00025	531	SMART	arm_5	149	189	IPR000225	GO:0005515
	Stsc151036g00025	531	SMART	arm_5	360	400	IPR000225	GO:0005515
	Stsc151036g00025	531	SMART	arm_5	190	232	IPR000225	GO:0005515

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151036g00025	Stsc-Chr151036	188312	193269	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151036g00025	132	392	U-box Gene Family	AT3G46510	24.904	5.10e-12	66.6

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151036g00025	K15042		-	gmx:100797267	964.911

Showing 1 to 1 of 1 entries