Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151036g00025 ATGTCGTACCGCCCTACCGCAAACTCAAGGACCGATGTCCGCCGGAGCCGCTACAAGGTGGCTGTGGACGCCGATGAGGGTCGCCGGCGCCGAGAAGACACCATGGTCGAGATCAGGAAGAACCGCAGGGAAGAGAGCTTGCAGAAGAAGCGGAGAGAGGGCCTTCAACCACAGCAGATTCCCGCTTCTGCACAATCCACTGTGTTAGAGAAGAGGTTGGAACTCCTGCCTACGATGGTTGCTGGTGTTTATTCCGCTGATAATAGCCTGCAGCTGGAAGCAACAACTCAGTTCCGGAAGTTGCTTTCCATTGAGCGCTGTCCGCCGATTGAGGAGGTTATACAGGCTGGTGTGGTTTCTCGCTTTGTTGAATTTCTTTCGAGGGATGACTTCCCCCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCTATTTTTGTAAGGCTCCTTGCTTCTCCCAGTGATGATGTCCGTGAACAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGGGATTCTCCCAGATGCCGTGATCTTGTACTCAGTCATGGTGCTCTGCTTCCTCTGTTGGCACAATTGAATGAACATGCCAAACTTTCTATGCTTAGGAATGCTACCTGGACACTCTCAAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACAGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTCTGTCCCCGGCTAGTTGAGCTTTTAACGCACCCATCCCCTTCAGTTCTAATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACAGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAAGCTCTTTCTTGTCTTCTTACTCTCTTGTCTGGTAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGTAATAAGCAGCAGATACAGGCTGTAATCGAGTCTAATATAATTGGTCCTTTGGTCAACCTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATATCAAATGCTACATCTGGTGGATCTCATGAACAACTCAAGTACCTGGTAAGCCAAGGGTGTATCAAGCCCTTGTGCGATCTTCTTATCTGTCCTGATCCTAGAATTGTGACAGTTTGTCTGGAAGGACTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAGAATATGGGCAATACCGGTGATGTGAATCTATATGCCCAAATGATTGACGATGCAGAGGGTTTGGAGAAAATCGAGAATCTCCAGAGTCATGATAACACCGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACATACTGGTTGGAGGAAGATGACGAGACTATGCCTCCAGGGGATGGTTCCCNNNNNNNNNNCAACTTTGGTGGCTCTGATGGTCCTGCTGTGCCACCTGGTGGATTCAACTTCTAA 1596 0.4643 MSYRPTANSRTDVRRSRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQIPASAQSTVLEKRLELLPTMVAGVYSADNSLQLEATTQFRKLLSIERCPPIEEVIQAGVVSRFVEFLSRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLTHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALSCLLTLLSGNYKKSIKKEACWTISNITAGNKQQIQAVIESNIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDGSXXXXNFGGSDGPAVPPGGFNF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151036g00025 531 MobiDBLite consensus disorder prediction 500 531 - -
Stsc151036g00025 531 FunFam Importin subunit alpha 13 52 - -
Stsc151036g00025 531 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Stsc151036g00025 531 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Stsc151036g00025 531 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Stsc151036g00025 531 Gene3D - 75 497 IPR011989 -
Stsc151036g00025 531 SMART arm_5 317 358 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 149 189 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 360 400 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 190 232 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 106 147 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 403 443 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 234 273 IPR000225 GO:0005515
Stsc151036g00025 531 SMART arm_5 275 315 IPR000225 GO:0005515
Stsc151036g00025 531 Gene3D - 13 52 IPR036975 GO:0006606
Stsc151036g00025 531 Pfam Atypical Arm repeat 458 504 IPR032413 -
Stsc151036g00025 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Stsc151036g00025 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Stsc151036g00025 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Stsc151036g00025 531 MobiDBLite consensus disorder prediction 22 59 - -
Stsc151036g00025 531 SUPERFAMILY ARM repeat 16 501 IPR016024 -
Stsc151036g00025 531 MobiDBLite consensus disorder prediction 22 52 - -
Stsc151036g00025 531 FunFam Importin subunit alpha 74 497 - -
Stsc151036g00025 531 PANTHER IMPORTIN ALPHA 14 502 - -
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Stsc151036g00025 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151036g00025 Stsc-Chr151036 188312 193269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151036g00025 132 392 U-box Gene Family AT3G46510 24.904 5.10e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151036g00025 K15042 - gmx:100797267 964.911