Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc150g00005 ATGGCTAAAACACTGTCAGTAGGAGGGGAGGACGGGGAAGAAATGGGTAACAAAATGGAGGTAGAGGAGGAGAATGAAAAGGAAGAAGAAGAAGGAGAACAAGAAGACGAAAAGAAAGTGGAGGAGGCGGAAGCAGTGCATGAGGAGGAGACGAGGAGAAAACAGAAAATAACGATAAAGTTGGTGTATGGCGAGGGATCAGGAAGATGGGATTCGTCGTCAAGCTATAACTCTTTGTTTTGCTGTTGTCAGGCAGATGAATGTCTAGCGAATTTGCAGGCGGCCAAGAGGTACAATCGCCGCCACAAGGTGTGTGAGCGACATGCTAAGGCTCCGGTAGTCTTAGTCTCCGGCGATCGTCAGAGGTTCTGCCAACAGTGTAGCAAATTCCATGAGCTTGCATTGTTTGATGACAACAAAAGGAGCTGTAGAGAAAGACTGGCCAGTCACAATGAGCGCAGAAGAAAGGCTCAAGCTCAGGATGCAAACATCCAGCAACACCCACAGGGAGATCTTAATTAA 522 0.477 MAKTLSVGGEDGEEMGNKMEVEEENEKEEEEGEQEDEKKVEEAEAVHEEETRRKQKITIKLVYGEGSGRWDSSSSYNSLFCCCQADECLANLQAAKRYNRRHKVCERHAKAPVVLVSGDRQRFCQQCSKFHELALFDDNKRSCRERLASHNERRRKAQAQDANIQQHPQGDLN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc150g00005 173 Gene3D - 79 144 IPR036893 GO:0003677|GO:0005634
Stsc150g00005 173 MobiDBLite consensus disorder prediction 16 38 - -
Stsc150g00005 173 MobiDBLite consensus disorder prediction 148 173 - -
Stsc150g00005 173 ProSiteProfiles Zinc finger SBP-type profile. 80 157 IPR004333 GO:0003677
Stsc150g00005 173 SUPERFAMILY SBT domain 81 160 IPR036893 GO:0003677|GO:0005634
Stsc150g00005 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 170 IPR044817 GO:0003677
Stsc150g00005 173 Coils Coil 140 160 - -
Stsc150g00005 173 Pfam SBP domain 83 156 IPR004333 GO:0003677
Stsc150g00005 173 MobiDBLite consensus disorder prediction 1 51 - -
Stsc150g00005 173 Coils Coil 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc150g00005 Stsc-Chr150 39870 40811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc150g00005 54 156 SBP-box Gene Family AT3G15270 55.340 2.68e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc150g00005 SBP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc150g00005 - - vra:106776693 147.902