Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1504g00002 ATGATGGCCTACACAGGTTCAATGCAATTGCCTCGTGAGCTTAGGCTACACAGTAATAGTGGGATCCGTAGTTTCCAAAATAATCCGATAGGTGTTGGACGATTACATTTGGTTACCATAAATCTTTCACCACGCAGTTGGAAGCAGAATTCTTCAGCACATCATCTTTTCAATAGAGTACACGCCCCAGTAAGGCATGTGCCTTCCAGATGTAAAGTTTTCATATGTAGATCTGTTCTACTACCAGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCTGCTGTATTTTTAACAAGGTCGCACGAGACTCTAAGTGGAAACCCTGTTTTGCTTCGATTGATCCCAGCACTCGGTATCATTGCCTTTGCTGTTTGTGGCCTTGAACCACTCATACGTCTTGGCAGAGTTCTTATTCTTCAAAGAACTGACAATACTTGGAAGAAAAGTAGTTCCAGATATATCATGATATCTTATTTTCAGCCATTGCTATTGTGGACTGGGGCAATGCTCATATGCAGGGCACTAGATCCACTTGTCCTACCATCTGAGTCTAGCCAGGCTGTGAAGCAACGGCTGCTGAATTTTGTGAGATCGTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTTATTCAACAAGCACAAAAATTCTTTATGGAGGCAAATGACTCCAGTGATTCAAGAAATGTGGGCTTTGACTTTGCTGGGAAAGCTGTATATACTGCTGTGTGGGTTGCTGCAGTTTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTCTGGGGACAGTATTACTCACTCTTGCAGGTCGCGAGATATTCACAAACTTTCTGTCGAGTATAATGATCCATGCTACTCGGCCATTTGTTATGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGATGGTGGTCACCAACAATTGTGAGAGGTGATGATCGTGAAGCGGTTCATATACCCAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAGAAATCTCATTGGCGCATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGGAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGCAGAAGTTGCACAGAAGGGTTTTTCTGGAGAATGTCAATCCAGAAAATCAGGCTCTTATGGTATTAATATCTTGCTTTGTGAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATTCTCTTGGATCTTCTTAGAGTTGTTTCTCACCATCGAGCTCGGCTAGCCACTCCCATTCGTACGGTTCAGAAAATATACGGCGAGGCTGACTCGGAAAATATACCTTTTGGGGACACTATTTTCACTAGATCCAGAGCAGCGGGAAATCGCCCATACCTTCTTATAGAACCACCATATAAAGTTAATGGGGAGGATAAAGTTAAGCCTTCAGCTCGTTCAACTCGTCCAAATGAGGAAAAAGATGCCAAAGTTGATGAGACCTTGGTGTCTGACCCCAAAGTAGATGAGAATTCAGTGTCATCAACCACCTCACCTGGTGTAAACTCCAAGGATAAATCTAAGACAGCTTCTGAAACCCAGAATCAGAATCTGGGCTCTGGTGGTTCAGTTGAGAAGAACTCCAAACCCTTGCAGCCCAAAAAGGAAAATGCAAATGCAGGAAAGGGTGGAACAGTTCCCCTATCGAAAAACCTTGCGCCCGAAACTTCTCCGGTTACTTTGCATGAGTCTAGCAAAGGAGAGACAACTTCTGCCAGTTCTTCACCGTCGAAGCAAGATGAAGAGAGATCTGCTGTGTCGTCACCTTCAATTAGGCCTTCCTTGGAAGATAATATCCTTCTTGGTGTTGCTCTCGAAGGTTCAAAACGAACTCTTCCGATTGACGAAGAAATGACTCCACCTCCTATCCCTGGAGAATCGCAAGAATTTGCTGTCCAAAGGAATGGGAGTGGACCTCCTGCTAACAAGGATAAGGACCCCAAGCAGAATGATTAG 2079 0.4329 MMAYTGSMQLPRELRLHSNSGIRSFQNNPIGVGRLHLVTINLSPRSWKQNSSAHHLFNRVHAPVRHVPSRCKVFICRSVLLPGGGSGTPLMKSAAVFLTRSHETLSGNPVLLRLIPALGIIAFAVCGLEPLIRLGRVLILQRTDNTWKKSSSRYIMISYFQPLLLWTGAMLICRALDPLVLPSESSQAVKQRLLNFVRSLSTVISFAYCLSSFIQQAQKFFMEANDSSDSRNVGFDFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVMNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMVLISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADSENIPFGDTIFTRSRAAGNRPYLLIEPPYKVNGEDKVKPSARSTRPNEEKDAKVDETLVSDPKVDENSVSSTTSPGVNSKDKSKTASETQNQNLGSGGSVEKNSKPLQPKKENANAGKGGTVPLSKNLAPETSPVTLHESSKGETTSASSSPSKQDEERSAVSSPSIRPSLEDNILLGVALEGSKRTLPIDEEMTPPPIPGESQEFAVQRNGSGPPANKDKDPKQND 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1504g00002 692 Gene3D - 299 354 IPR023408 -
Stsc1504g00002 692 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Stsc1504g00002 692 MobiDBLite consensus disorder prediction 496 692 - -
Stsc1504g00002 692 MobiDBLite consensus disorder prediction 496 527 - -
Stsc1504g00002 692 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Stsc1504g00002 692 Gene3D - 195 297 - -
Stsc1504g00002 692 MobiDBLite consensus disorder prediction 591 635 - -
Stsc1504g00002 692 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 689 IPR045042 -
Stsc1504g00002 692 MobiDBLite consensus disorder prediction 528 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1504g00002 Stsc-Chr1504 2485 7761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1504g00002 1 673 Mechanosensitive Ion Channel Family AT1G58200 54.412 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1504g00002 K22047 - gmx:100796022 1073.15