Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1499g00006 ATGAAAAACCTCATCTTGGAGATTCCAAAAGCAAACATTGTGGATGAAGATTTTGTGAGGATAAACATGCCTCTGACTCCTCCTCCAAGAAAAGTGGCCTTTTCACCATGCCCAAGCCCTGCTTTCTCCAGAGTAAATGAGTCACCAGGCCCTTCATCATCAAGGAATAGGCCAACTATTAAAACTCTACTCCCCAAACTCAATTTAAAAATGAGGAGCACAAGCTCACAGCACAAGATTGAAAAGGCTGCTTTTCTTGCACTTGAAGGTTCACCAAAGGTGGCACCAAAGAAGCCTCTTCTTCTGAGGACATTGTCACTTACAAAGCTGATCACGCCTAGAGGGAAGAACACAGCATCCTTGCCTGCAACACCGATTTCTCACTCTAATCCGGGCTCCACACATGGAGGGGATGCTGCTTATTTGGCTTCAATTGATAAAGGGATCCATTTACCAATGCATCGTTCTCGTTCAGTTCCAGCACTTAACAAAGCAGGGAGCACAGGTGTAGGTGGAATGTTTCGTGTAATTCCATCCACACCAAGATTGGATGAGAAAATTGACACACCAACATCTATGACATCTCCATCTGGTGATACTGTTGAGAATGAGGATGGCGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATATGTATGGTTGAATTGGGAGAAGGTGCTGATGATACTCTTAAATTAGAGTGTAGTTGCAAAGGTGAACTTTCACTGGCTCACAAACAATGTGCAGTTAAATGGTTTGGCATCAAAGGAAACAGAACATGTGATGTGTGCAAGCAAGAAGTTAAGAATTTACCTGTCACTCTCTTGCGCCTTCAAACTGCACCTAGAGGTCAACATGCTGATATTTCTCAAACAAGGGTTTGGCAGGATGCTCCCATTCTTGTAATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGTTCCGGTGCTGTTGCCATGTCCCTTCCATTTTCTTGTATACTTGGTCTTCTTGCGAGCATGACATCTACAACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTGCAGTTTGTTCTGGTGGTTGTGAGTGGACATCTTTTGTATTCATTGGTTCACATGGAAGCTGTTCTAGCTATTTTGCTTGCCACATTTACTGGGTTTGGGGCTGTGATGTTTGTAGCTTGTGTTGTTAGTGAGATATCAAATTGGAGGAGAACATCAAGTGTTGGTGGTGAGTTGAATCAAGAGGCCGAAGAGGAGGGAGTGGCAGCTGATGAATCTGAAAGTCAAAGTAATTTGAGAGATTCTCCTGTGCATGTGCATGTGCTCCCACTGGTGTAA 1356 0.4336 MKNLILEIPKANIVDEDFVRINMPLTPPPRKVAFSPCPSPAFSRVNESPGPSSSRNRPTIKTLLPKLNLKMRSTSSQHKIEKAAFLALEGSPKVAPKKPLLLRTLSLTKLITPRGKNTASLPATPISHSNPGSTHGGDAAYLASIDKGIHLPMHRSRSVPALNKAGSTGVGGMFRVIPSTPRLDEKIDTPTSMTSPSGDTVENEDGGEDIPEEEAVCRICMVELGEGADDTLKLECSCKGELSLAHKQCAVKWFGIKGNRTCDVCKQEVKNLPVTLLRLQTAPRGQHADISQTRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAVAMSLPFSCILGLLASMTSTTMVRRNHVWVYATVQFVLVVVSGHLLYSLVHMEAVLAILLATFTGFGAVMFVACVVSEISNWRRTSSVGGELNQEAEEEGVAADESESQSNLRDSPVHVHVLPLV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1499g00006 451 Pfam RING-variant domain 217 265 IPR011016 GO:0008270
Stsc1499g00006 451 MobiDBLite consensus disorder prediction 416 440 - -
Stsc1499g00006 451 ProSiteProfiles Zinc finger RING-CH-type profile. 209 272 IPR011016 GO:0008270
Stsc1499g00006 451 PANTHER OS02G0165000 PROTEIN 3 423 - -
Stsc1499g00006 451 SMART ringv_2 216 266 IPR011016 GO:0008270
Stsc1499g00006 451 CDD RING_CH-C4HC3_MARCH 217 266 - -
Stsc1499g00006 451 MobiDBLite consensus disorder prediction 183 208 - -
Stsc1499g00006 451 MobiDBLite consensus disorder prediction 185 201 - -
Stsc1499g00006 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 274 IPR013083 -
Stsc1499g00006 451 SUPERFAMILY RING/U-box 213 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1499g00006 Stsc-Chr1499 10638 13209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1499g00006 214 272 C3H Transcription Factor Family AT2G37950 42.373 1.94e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1499g00006 - - gmx:100787963 581.637