Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1499g00004 ATGGAAACTGAAGCTCCTCAAGACAGAAAGGATAATAGCGCTGATGACACCACAATCCAAAAGGGTCCACAATCATCTGAAATAACTGAGGAACTCCCAAGTAGACAACATCGGACTATGAAAAACCTCATCTTGGAGATTCCAAAAGCAAACATTGTGGATGAAGATTTTGTGAGGATAAACATGCCTCTGACTCCTCCTCCAAGAAAAGTGGCCTTTTCACCATGCCCAAGCCCTGCTTTCTCCAGAGTAAATGAGTCACCAGGCCCTTCATCATCAAGGAATAGGCCAACTATTAAAACTCTACTCCCCAAACTCAATTTAAAAATGAGGAGCACAAGCTCACAGCACAAGATTGAAAAGGCTGCTTTTCTTGCACTTGAAGGTTCACCAAAGGTGGCACCAAAGAAGCCTCTTCTTCTGAGGACATTGTCACTTACAAAGCTGATCACGCCTAGAGGGAAGAACACAGCATCCTTGCCTGCAACACCGATTTCTCACTCTAATCCGGGCTCCACACATGGAGGGGATGCTGCTTATTTGGCTTCAATTGATAAAGGGATCCATTTACCAATGCATCGTTCTCGTTCAGTTCCAGCACTTAACAAAGCAGGGAGCACAGGTGTAGGTGGAATGTTTCGTGTAATTCCATCCACACCAAGATTGGATGAGAAAATTGACACACCAACATCTATGACATCTCCATCTGGTGATACTGTTGAGAATGAGGATGGCGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATATGTATGGTTGAATTGGGAGAAGGTGCTGATGATACTCTTAAATTAGAGTGTAGTTGCAAAGGTGAACTTTCACTGGCTCACAAACAATGTGCAGTTAAATGGTTTGGCATCAAAGGAAACAGAACATGTGATGTGTGCAAGCAAGAAGTTAAGAATTTACCTGTCACTCTCTTGCGCCTTCAAACTGCACCTAGAGGTCAACATGCTGATATTTCTCAAACAAGTTTCAGGGTTTGGCAGGATGCTCCCATTCTTGTAATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGTTCCGGTGCTGTTGCCATGTCCCTTCCATTTTCTTGTATACTTGGTCTTCTTGCGAGCATGACATCTACAACAATGGGTAGGGCTTAG 1179 0.4343 METEAPQDRKDNSADDTTIQKGPQSSEITEELPSRQHRTMKNLILEIPKANIVDEDFVRINMPLTPPPRKVAFSPCPSPAFSRVNESPGPSSSRNRPTIKTLLPKLNLKMRSTSSQHKIEKAAFLALEGSPKVAPKKPLLLRTLSLTKLITPRGKNTASLPATPISHSNPGSTHGGDAAYLASIDKGIHLPMHRSRSVPALNKAGSTGVGGMFRVIPSTPRLDEKIDTPTSMTSPSGDTVENEDGGEDIPEEEAVCRICMVELGEGADDTLKLECSCKGELSLAHKQCAVKWFGIKGNRTCDVCKQEVKNLPVTLLRLQTAPRGQHADISQTSFRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAVAMSLPFSCILGLLASMTSTTMGRA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1499g00004 392 MobiDBLite consensus disorder prediction 224 240 - -
Stsc1499g00004 392 CDD RING_CH-C4HC3_MARCH 256 305 - -
Stsc1499g00004 392 MobiDBLite consensus disorder prediction 222 247 - -
Stsc1499g00004 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 313 IPR013083 -
Stsc1499g00004 392 MobiDBLite consensus disorder prediction 1 16 - -
Stsc1499g00004 392 SUPERFAMILY RING/U-box 252 308 - -
Stsc1499g00004 392 ProSiteProfiles Zinc finger RING-CH-type profile. 248 311 IPR011016 GO:0008270
Stsc1499g00004 392 PANTHER OS02G0165000 PROTEIN 2 389 - -
Stsc1499g00004 392 SMART ringv_2 255 305 IPR011016 GO:0008270
Stsc1499g00004 392 Pfam RING-variant domain 256 304 IPR011016 GO:0008270
Stsc1499g00004 392 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1499g00004 Stsc-Chr1499 10115 13209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1499g00004 253 311 C3H Transcription Factor Family AT2G37950 42.373 1.63e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1499g00004 - - gmx:100787963 514.227