Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1499g00001 ATGGGTAACATAGGAAGTAGCGGTGCCAGCAACCGCAGAAGACACGGTGGTGGAGGTGGCGGAAGTGGACGGAGGATCCATCCTCCACCTCCTCCTCCTCCGCCGGTGACGCCACAGCCGGAAATCACAGCCAATCGGTTTGTGTACCCTGCTGCTGCGACTCCATATCATAATTATCCCGGTTATTATCCGCCACCCGTGCCTTTGCCGGCGCCGTACGACCACCACCACCGGCCAGCAGCGGTAGAGCCGATGTGGGGGCGGTATCCTCCGCCGGCAGCGCCTATGCCTCCGACGCCGTATGTGGAGCACCAGAAGGCGGTTACTATAAAGAATGATGTGAACATCAAGAAGGAAACTTTGAGGATTGAAGCTGATGAAGACAACCCTGGCAAGTTCCTTGTTTCATTCACATTTGACGCAACCTTTTCTGGGAGCATTACCATACTTTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTTACTCCAACAAAGGAAGATGCTCTTCCACCTGTGACTGTAAATTTCCAGCATGGTCTTGGCCAGAAATTTAGGCAGCCGGCTGGAACCGGTATTGATTTTTCGCAATTTGAGGAATCTGAGTTATTGAAAGTGGGAGAGATGGATGTCTATCCTCTTGTAGTTAAGGCAGACGCAACGTTAGGCGACGATGATGCATCAAATGACGGATTAAATGATGGATCAAATGAAACTGGAAATGAAGGATCTAATGGAACTCGAATAACAGGTAATACAAACTCGCAGATAACAAAAGCAGTGTTTGAGAAGGAGAAAGGGGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTGTGGGTGAATGGATTGAGATATGAGCTGCAGGAGATATATGGAATTGGAAATTCAGTGGAGAGTGAAGTGGATGGAAATGACCCAGGAAAAGAATGTGTTATTTGCCTGTCAGAACCCAGGGATACAACTGTGCTTCCTTGCCGTCACATGTGCATGTGTAGCGGATGTGCCAAGGTTTTGAGGTTCCAGACAAATAGGTGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAGGTTGGTCCTGAACCCCAACCCCAACCCCAGCCCCAGGAGTGA 1116 0.4928 MGNIGSSGASNRRRHGGGGGGSGRRIHPPPPPPPPVTPQPEITANRFVYPAAATPYHNYPGYYPPPVPLPAPYDHHHRPAAVEPMWGRYPPPAAPMPPTPYVEHQKAVTIKNDVNIKKETLRIEADEDNPGKFLVSFTFDATFSGSITILFFAKEGEGCILTPTKEDALPPVTVNFQHGLGQKFRQPAGTGIDFSQFEESELLKVGEMDVYPLVVKADATLGDDDASNDGLNDGSNETGNEGSNGTRITGNTNSQITKAVFEKEKGEFQVKVVKQILWVNGLRYELQEIYGIGNSVESEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPQPQPQPQE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1499g00001 371 MobiDBLite consensus disorder prediction 25 40 - -
Stsc1499g00001 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 358 IPR013083 -
Stsc1499g00001 371 PANTHER MAHOGUNIN 1 358 IPR045194 GO:0061630
Stsc1499g00001 371 Pfam Zinc finger, C3HC4 type (RING finger) 307 353 - -
Stsc1499g00001 371 MobiDBLite consensus disorder prediction 229 251 - -
Stsc1499g00001 371 FunFam probable E3 ubiquitin-protein ligase LOG2 293 358 - -
Stsc1499g00001 371 ProSiteProfiles Zinc finger RING-type profile. 309 348 IPR001841 -
Stsc1499g00001 371 MobiDBLite consensus disorder prediction 1 43 - -
Stsc1499g00001 371 CDD mRING-HC-C3HC5_MGRN1-like 307 348 IPR045195 -
Stsc1499g00001 371 SMART ring_2 309 347 IPR001841 -
Stsc1499g00001 371 MobiDBLite consensus disorder prediction 224 251 - -
Stsc1499g00001 371 SUPERFAMILY RING/U-box 308 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1499g00001 Stsc-Chr1499 2420 5458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1499g00001 87 328 C3H Transcription Factor Family AT3G09770 62.097 7.94e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1499g00001 - - aip:107626498 575.859