Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1489g00004 ATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAATATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGCGAGATCCACAACGTCCTGTCTGCAAGATTGGTGATTTAGGTTTATCAAAGGTTAAACAGCACACACTAGTGTCAGGAGGGGTACGGGGAACATTGCCATGGATGGCACCTGAACTTCTGAGTGGGAAAAGTAATATGGTCTCAGAGAAGATTGATGTTTATTCATTCGGGATAGTCATGTGGGAATTGCTCACAGGGAATGAACCCTATGCTGAAATGCATTGTGCTTCAATAATAGGTTTGAAGACACTTAATATGCACAATTTCTCGTTTTTGTTTTTCAGGAGGAATTGTGAACAACACTTTGCGTCCTCAAATCCCGACATGAAGCGGCATGGTGATCTGAAGAGAGCTACATGTGGAATATCAATATATCACAGTGGCTTTTGCAGTTTTGAAGGTGATCAGGTTTCATGGCTGTACAGAATGTACCTTCGAGGGTTTTGGGACTTCCGGAATGATTGGAGGTGCCAAGGAAGAAGGCTGGAAGTTAATGGTTTAGAAGGTGTACCTGGAGGAGAGTTGATCCCCTCTTTATATGCCTGTGGTGGTTCCTATTATTTAGGGGATAAATCCGTACGAGATCGATGCAGATATAATCCCGATCTCGTGTGGATCCGGTAA 711 0.4248 MDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYAEMHCASIIGLKTLNMHNFSFLFFRRNCEQHFASSNPDMKRHGDLKRATCGISIYHSGFCSFEGDQVSWLYRMYLRGFWDFRNDWRCQGRRLEVNGLEGVPGGELIPSLYACGGSYYLGDKSVRDRCRYNPDLVWIR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1489g00004 236 Gene3D Transferase(Phosphotransferase) domain 1 1 148 - -
Stsc1489g00004 236 PANTHER SERINE-THREONINE PROTEIN KINASE 1 108 - -
Stsc1489g00004 236 SUPERFAMILY Protein kinase-like (PK-like) 2 124 IPR011009 -
Stsc1489g00004 236 ProSitePatterns Serine/Threonine protein kinases active-site signature. 15 27 IPR008271 GO:0004672|GO:0006468
Stsc1489g00004 236 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1489g00004 236 Pfam Protein tyrosine and serine/threonine kinase 2 108 IPR001245 GO:0004672|GO:0006468
Stsc1489g00004 236 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1489g00004 Stsc-Chr1489 8778 14689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1489g00004 1 109 MAP Kinase Kinase Kinase AT5G57610 95.413 2.78e-67 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc1489g00004 PK_Tyr_Ser-Thr 7.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1489g00004 - - gmx:100779077 227.254