Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1482g00001 ATGGGATGCTTCTTGACACTCTTGAAGAAAAAGCTTGATGAAATGAAGCTCAAAAACCAAATCAGCCGTAACAAGAACTTAGCTTCCCATCTAGCTGAGCCTCGAAGACAGTCTGTCTCGTCGTCGGCGCTCTCTTCGCCGGCTAGTTTCCGGGCAGAGCCAAGTAACCCGGTTTTCCCTAACATTATTAACAACTTTCATGGAGGGCCAGTTTCTGCTTCGTCGTCCTCTCTTAGCGAAGCAGAACAAGATGCTGTGGCCGCAATTGCACATGTACAACAACCAAGGTGTCAATATGGATTATCGAATGGGCTGTTTCCAACACATCCACATCCACATCCTGTTCCCCTTCCGCGTCCTCCTCCTGCTCTTTCTCCATTGAAGGCTAATGTCAGCTCAAGTCCTACTTCTAGTCCTGTGTCACCTTCGCGTACATCTTCACTTCGATACTACCGTTATGAGGAAATCTTAGCTGCTTGCCAAAATTTCTCTTCTGAACGATGTGTGTTACAGTGTGTTTCGTCAAGTAATTTTAAAGCTTCCTTTGGTGACGATTCTTCATCAAGGACCGTAGAAGCTACTGTCACCCGTGTTAATCCTTCAATTCAGGACCTGAGGGACTTCATTAATGAAGTTAATACTCTTTCATCTTTGCAACATCCAAACATTTGTAGATTGATTGGATTCCATGCACGTGAGAGCTCAGAACCGAGGATGTTGCTGTATGAGAGGCTACACCATGGAAGCTTGGACCACTTGCTTTTCTGTTCATCTGATGATCATCCAGTTCTTGATTGGAATTCAAGATTGAAAATCGCCATATGTGTTGCACAAGGTCTTGCTTTCTTGCATGATGAAGGGCCCTTCAAGGCAATGTACAAGGATTTTTCAACGGCCAACGTACAGGTTGAAAAAGATTTCAGTGCAAAGCTTTCAGGGTATGGTTGCGTAGGGGGGCGAGGTTTTTCGGAGAAAGCTGTTGGAAACATGTCAATGGAAACATTCGAAAGAGGAATACTTACTCCAAAAAGCAACGTATGGAGTTTCGGAATCATTCTTCTGGAGCTGCTCACCGGTAGAAAGAACCACGACAGCCGCCACCCAAGCGAAGACAAGAACATTGTCAAGTGGAGCTGGCCATTCCTCAACGATGAGTTTGGACTATCCATAATCATGGATCCTCAGCTTAATGGCCACTACCCTATAAAAGGGGCGCGAATGTTGGCTGACTTGGCGCATCGATGTCTCCAGAAGGAGCCCTCCATACGCCCCGCCATGCGAACAGTCGTCAAGCATCTCAAGATGATACAAGAGGCGAATTATTGCCGTATCTCTTCGCTGTTGTCGTTGTCGTCGTCGCGCCCGGAAACTATTAGGCCTAGATTGAGTGTCTCTCCGGCGTCACCACCAGGAAGCAAGGATACAGTGGGGTCTCTCCCGTTGCCATTATCCGGAGCACCAATGCTACATGCTTCGCGCGTGCACACCACGCTCCCCCGTCTGCCTTGTGGTTCCATTTGCGTTGTGGAGAAGGTTGTTAGGCAGGAAACTAAGCACTGCCAGGAATCATCCTAA 1575 0.4743 MGCFLTLLKKKLDEMKLKNQISRNKNLASHLAEPRRQSVSSSALSSPASFRAEPSNPVFPNIINNFHGGPVSASSSSLSEAEQDAVAAIAHVQQPRCQYGLSNGLFPTHPHPHPVPLPRPPPALSPLKANVSSSPTSSPVSPSRTSSLRYYRYEEILAACQNFSSERCVLQCVSSSNFKASFGDDSSSRTVEATVTRVNPSIQDLRDFINEVNTLSSLQHPNICRLIGFHARESSEPRMLLYERLHHGSLDHLLFCSSDDHPVLDWNSRLKIAICVAQGLAFLHDEGPFKAMYKDFSTANVQVEKDFSAKLSGYGCVGGRGFSEKAVGNMSMETFERGILTPKSNVWSFGIILLELLTGRKNHDSRHPSEDKNIVKWSWPFLNDEFGLSIIMDPQLNGHYPIKGARMLADLAHRCLQKEPSIRPAMRTVVKHLKMIQEANYCRISSLLSLSSSRPETIRPRLSVSPASPPGSKDTVGSLPLPLSGAPMLHASRVHTTLPRLPCGSICVVEKVVRQETKHCQESS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1482g00001 524 MobiDBLite consensus disorder prediction 109 125 - -
Stsc1482g00001 524 MobiDBLite consensus disorder prediction 127 144 - -
Stsc1482g00001 524 Gene3D Phosphorylase Kinase; domain 1 128 243 - -
Stsc1482g00001 524 Coils Coil 5 25 - -
Stsc1482g00001 524 PANTHER OS01G0588500 PROTEIN-RELATED 124 437 - -
Stsc1482g00001 524 MobiDBLite consensus disorder prediction 459 479 - -
Stsc1482g00001 524 MobiDBLite consensus disorder prediction 27 50 - -
Stsc1482g00001 524 MobiDBLite consensus disorder prediction 108 144 - -
Stsc1482g00001 524 Gene3D Transferase(Phosphotransferase) domain 1 245 446 - -
Stsc1482g00001 524 SUPERFAMILY Protein kinase-like (PK-like) 194 446 IPR011009 -
Stsc1482g00001 524 Pfam Protein tyrosine and serine/threonine kinase 190 433 IPR001245 GO:0004672|GO:0006468
Stsc1482g00001 524 ProSiteProfiles Protein kinase domain profile. 167 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1482g00001 Stsc-Chr1482 141 6393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1482g00001 146 437 Receptor kinase-like Gene Family AT4G02010 33.555 6.98e-47 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Stsc1482g00001 PK_Tyr_Ser-Thr 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1482g00001 - - gmx:100808712 473.781