Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1464g00003 ATGGAAGGCTTTAAAGTCATTCTATTCTGCTTCTTTCTGATGAACTGCATGGTTGCCTCCACTGCAAGGAACACCATTGATTCACTGCAATCTATCAGTGATGGTGAGACCTTAGTTTCAGCAGATGAAACTTTTGCATTGGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTACCTCGGAATCTGGTTTAACAAAGATCCAGCAAAGACAGTAGCATGGGTTGCAAACAGAGAAAAACCCCTCACTCACTCTTCCGGGGTTTTGAAGCTCAACAACACCGGAATTCTACTCCTTCTTGATCATAACAATAGTCTTGTTTGGTCCTCCAACACAACAAGATCCCTCCTGAACCCGATCGCAAAGCTTTCGAATTCAGGGAATCTTGTTGTGCAAGAAAGCAGCAACAATGGTGCTACCAAAGAAGATTTCGCTTGGCAAAGTTTTGATTATCCATGTGACACTCTCTTGCCTGGACAGAAGTTAGGAAGGAATCTAAAAACAGGACAGAATCGATTTCTAACCTCGTGGAACAGCTCGGATGATCCGTTTCCGGGTAGTTATACTTTACAATTTGATATCAAAGGTTATCCTCAATTAGTCCTTAAAGAAGGCACATCCATAATATTTCGTGCCGGATCATGGAATGGAGATCAATTCAGTGGAACGCCGCAATTGAAAGGAAACTCTGCCTTTAGATATATAACTGTTTCTAATGAGGAAGAGATATATTTCATGTATGAGCTTATCAATAGTTCAATCCCGCATAGAGTTTTCCTAACGCCGGAGGGAATCAACGAGCGAAGCGAGTGGAATACAGACACAATGAGTTGGACTAACTTGGCAAAGCTACCGGCGGATGATTGTGACTACTATGAAACATGTGGAGCTTATTCTAGCTGTAACATAAACAACTATCCAATGTGTAGTTGTTTGGAGGGATTTGTGCAAGATAATGATAATAAGAAGCAGCAAGGTTTATTATCAGATGGTTGTGTAAGGAGAACTTCATTGGATTGTTATGGAGATGGGTTTTTGAAGTACTCAGGCCTGAAATTTCCAGACACAGAAAGATCATGGTTTAGTAGAAATATCAGCATTGAAGATTGTAAGATGCTGTGCTTGAAGAATTGTTCATGTATGGCGTATGCAGCTTTGGATATAAGTGAAGGTGCAAGTGGTTGTTTGATGTGGTTTGGTGATTTAAATGATATTAAAGATTTGAGTCCAGATTCTCTTGAAGATATTTACATAAGAATGGCTGCTACAGAACTAGAAGCTATTCAGGAAAATAAATCACACAAATCAAACATCCGAAAGAAAAGGACCATCATCATAATTTGTGTGTTATGTTTTAGTGTTTTAACCATATGCTTGGCCTTCATCATCTTTAGATGGAAGATGCTAAGAAAAGGTGTAATATGTGACCAACATGAGGAAAATCTACAATTGCCTTTGTTTGATATGTCCATAATTTCTTCTGCAACAAATAAGTTTTCAACTGATTACATTCTGGGAAAAGGTGGCTTTGGTCCGGTATATAAGGGTGTCTTAAAGGATGGAAAGGAAATTGCAGTTAAGAGACTCTTACAGACTTCAAGCCAAGGAATCCAAGAGTTCAAAAACGAAGTTATGCATATTGCCAAACTTCAACATAGGAATTTAGTGAAACTCCTAGGATGTTCCATTTATGCAGAAGAAAGATTGCTTGTTTATGAATTTATGCCCAACAAAAGCTTGGATTACTTCATATTTGATGAAAAGAAGGGTATGTTACTAGATTGGACAAGGCGCTTTCACATTATCAATGGGATTACTCGAGGCCTTCTTTATCTTCATCAAGATTCAAGACATAGAATAGTTCACAGAGATCTCAAAGCCGCCAATGTTTTGTTGGATGGTGAAATGAACCCAAAAATTTCAGACTTTGGACTCGCCAGAAGTTTCGGAGGGAACGAAACTAAAGCAAACACACGACATGTTGTCGGAACATACGGATATTTATCACCAGAGTACATAATTGATGGAGTTTACTCAATAAAATCTGATGTATTTAGTTTCGGAGTTTTGGTGTTGGAAATAGTAAGTGGGAGTAGAAATAGAGGATTCATTCATCAAGATCACCACTTTAATCTCCTAGGACATGCATGGAAACTATTTATGGAAGAGAAAGGGTATGAAATAATTTATGCTCCACTAAGAGATAATAAATCAAATTTATGTTCAATGCTAAGATCAATTCATGTGGGATTACTTTGTGTGCAAAAGAGTCCAGATGAGAGGCCAAACATGTCATCTGTTGTTCAAATGTTGAGTAGTGAATCCACACTACCTCCACCTAAGATGCCAGGATTCTTCACAGAAAGAGAAATGGTTGATGAAGGTTCTGGTTCAAGTAATAACAGAACATGCTCAATCAATGATGTCACAGATAGCATTTTGGAGGCTAGATAG 2454 0.3847 MEGFKVILFCFFLMNCMVASTARNTIDSLQSISDGETLVSADETFALGFFSPGTSKNRYLGIWFNKDPAKTVAWVANREKPLTHSSGVLKLNNTGILLLLDHNNSLVWSSNTTRSLLNPIAKLSNSGNLVVQESSNNGATKEDFAWQSFDYPCDTLLPGQKLGRNLKTGQNRFLTSWNSSDDPFPGSYTLQFDIKGYPQLVLKEGTSIIFRAGSWNGDQFSGTPQLKGNSAFRYITVSNEEEIYFMYELINSSIPHRVFLTPEGINERSEWNTDTMSWTNLAKLPADDCDYYETCGAYSSCNINNYPMCSCLEGFVQDNDNKKQQGLLSDGCVRRTSLDCYGDGFLKYSGLKFPDTERSWFSRNISIEDCKMLCLKNCSCMAYAALDISEGASGCLMWFGDLNDIKDLSPDSLEDIYIRMAATELEAIQENKSHKSNIRKKRTIIIICVLCFSVLTICLAFIIFRWKMLRKGVICDQHEENLQLPLFDMSIISSATNKFSTDYILGKGGFGPVYKGVLKDGKEIAVKRLLQTSSQGIQEFKNEVMHIAKLQHRNLVKLLGCSIYAEERLLVYEFMPNKSLDYFIFDEKKGMLLDWTRRFHIINGITRGLLYLHQDSRHRIVHRDLKAANVLLDGEMNPKISDFGLARSFGGNETKANTRHVVGTYGYLSPEYIIDGVYSIKSDVFSFGVLVLEIVSGSRNRGFIHQDHHFNLLGHAWKLFMEEKGYEIIYAPLRDNKSNLCSMLRSIHVGLLCVQKSPDERPNMSSVVQMLSSESTLPPPKMPGFFTEREMVDEGSGSSNNRTCSINDVTDSILEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1464g00003 817 PIRSF SRK 3 817 IPR024171 GO:0004674
Stsc1464g00003 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 183 IPR036426 -
Stsc1464g00003 817 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Stsc1464g00003 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 149 - -
Stsc1464g00003 817 SUPERFAMILY Protein kinase-like (PK-like) 482 771 IPR011009 -
Stsc1464g00003 817 Gene3D - 17 149 IPR036426 -
Stsc1464g00003 817 Pfam PAN-like domain 341 405 IPR003609 -
Stsc1464g00003 817 Pfam D-mannose binding lectin 71 177 IPR001480 -
Stsc1464g00003 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Stsc1464g00003 817 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Stsc1464g00003 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 779 - -
Stsc1464g00003 817 CDD B_lectin 30 152 IPR001480 -
Stsc1464g00003 817 Gene3D Hepatocyte Growth Factor 339 421 - -
Stsc1464g00003 817 SMART ntp_6 340 420 IPR003609 -
Stsc1464g00003 817 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Stsc1464g00003 817 SMART serkin_6 499 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1464g00003 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 574 - -
Stsc1464g00003 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 762 - -
Stsc1464g00003 817 Gene3D Transferase(Phosphotransferase) domain 1 575 777 - -
Stsc1464g00003 817 Pfam Domain of unknown function (DUF3403) 772 817 IPR021820 GO:0004674
Stsc1464g00003 817 CDD PAN_AP_plant 336 421 - -
Stsc1464g00003 817 Gene3D Phosphorylase Kinase; domain 1 467 574 - -
Stsc1464g00003 817 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Stsc1464g00003 817 CDD STKc_IRAK 505 771 - -
Stsc1464g00003 817 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1464g00003 817 SMART blect_4 29 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1464g00003 Stsc-Chr1464 4769 8280 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1464g00003 476 785 Receptor kinase-like Gene Family AT4G23230 55.949 9.47e-114 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc1464g00003 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1464g00003 - - adu:107462372 1070.46