Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1464g00002 ATGGCAGATTCTATTACAAGAGATACTATTGACACACTCAAGTCTATCAGTGATGGTGAGACCTTAGTTTCAGCAGATGAAACTTTTGCATTGGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTTGGAATCTGGTATAACAAAGTCCCTAAACTCACAGTTGTATGGGTTGCAAACAGAAACAAACCTCTAACTGACTCTTCAGGGCTTTTGACGGTTAACAACACCGGAATCCTTCAGCTTCTCAACCATAACAAGACTGTCATTTGGTCCTCCAACACAACAAGGCCTGCAGCAGCACAGCATCCGATCGCGAAGCTTTTGAATTCTGGAAATTTCATTGTGCAGGAGAAAAGCAACAACAACAATGTTGATGAGTTTTTGTGGCAGAGTTTTGATTATCCATGTGACACACTTCTACCTGGACAGAAATTCGGAAGAAATCTAGTTACAGGGCTAAACAGGTACTTGTCATCATGGAAAAGCTCTGATGATCCATCTCCGGGGAGGTATAATTCTGAAGTTGATGTTCATGGATTTCCACAAATGTTTATAAGAGATGGCACGGTGAAAAGATATCGTGTTGGATCATGGAATGGTGTTCAGTTCAGTGGAAGAGCACCTCAGTGGAAGAAAACAACAATCTTTAGGATCAACTTTGTTGTAACTGAAGAAGAAGTGTACTACATATATGAGCTTCTCAACAATTCAGTTTTTCACAAGGTAATGCTAACACCGGACGGATTCAGCCTCCGAAGTACTTGGAACGACGAAAAAATGGATTGGATTCCCTTTGCTAAGTTGCCAGTGGATGATTGTGATTACTATGCAACATGTGGTGCATATGCTGTATGCAACACCAACACTTTTCCTCTATGTGATTGCTTGGATTATAGATTTGTGCAGAAAACAGAAGATATATCTAGTGGTGGCTGTGTTAGAAGAACAGCATTGAATTGCCGTGAAGATGGATTTTTGAAGTATTCAAGTCTGAAATTGCCTGACACTGACGAATCATGGTATAATAGAAGTATAAACCTTGATGATTGTAGAGACTTGTGCTTGAAGAATTGCTCTTGTACTGCTTATTCACCTCTGGATGTTAGTAATGGGACAAGTGGTTGCTTACTTTGGTTTGGTAATTTAAAGGATATGAAACAGTTGAGTACTTCTCTTCAAGATATTTACATAAGGATGGCAAGAACAGAACTAGGTACATTGTTTATCGTTATTAATTTCAAAATTTCTTCTGACTGTTCGGTGTTTCCTAACTTCTCTGTGTTTCTTTTAACTGCATGCTTGGAAGCCATTGAAGGAAATAAATCCAACAAATCCCAAAGCAGGAAGCAAGAGACTATTATCATAGGCTCTACTTTGTTGTCCTTTGGTGTTCTAATTCTATGCTTAGCCTTCATCTTTTACAGAAGGAAGAGAAAGCAGAATGCCAGACAGATGAAACAAAATCAAGAAGCAAGAGCAACAAGTGATCACCATGACAGAGATCTAGAATTACCTTTGTTTGATATTTCTACAATTACTTCAGCAACAAACAATTTCTCAACAGACAACATACTAGGGAAAGGTGGTTTTGGATCAGTATATAAGGGTATTCTAGAAGATGGAAAAGAAATTGCTGTAAAGAGGCTCTCCCAAAATTCGCAACAAGGACTCCAGGAATTCAAAAATGAAGTTATGCATGTTGCCAAACTCCAGCATAGAAATTTAGTGAAGCTACTGGGATGCTGCATTCAAGCAGAAGAAAGACTATTGGTTTATGAATTTATGCCAAACAAAAGCTTGGACTTCTTCATCTTTGATGAAAAGAAGGGCATGCTATTGGATTGGCCAGCACGTTTGCACATTATCAATGGGATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGACATAGAATAATTCATAGAGATCTCAAAGCTGCTAACGTATTGTTAGACGACGAAATGAACCCGAAAATCTCGGACTTCGGATTGGCTAGAAGCTTTGGTGGGAATGAAGCTGAAGCAAATACCCAACATGTCGTTGGAACCTAG 2061 0.3916 MADSITRDTIDTLKSISDGETLVSADETFALGFFSPGTSKNRYVGIWYNKVPKLTVVWVANRNKPLTDSSGLLTVNNTGILQLLNHNKTVIWSSNTTRPAAAQHPIAKLLNSGNFIVQEKSNNNNVDEFLWQSFDYPCDTLLPGQKFGRNLVTGLNRYLSSWKSSDDPSPGRYNSEVDVHGFPQMFIRDGTVKRYRVGSWNGVQFSGRAPQWKKTTIFRINFVVTEEEVYYIYELLNNSVFHKVMLTPDGFSLRSTWNDEKMDWIPFAKLPVDDCDYYATCGAYAVCNTNTFPLCDCLDYRFVQKTEDISSGGCVRRTALNCREDGFLKYSSLKLPDTDESWYNRSINLDDCRDLCLKNCSCTAYSPLDVSNGTSGCLLWFGNLKDMKQLSTSLQDIYIRMARTELGTLFIVINFKISSDCSVFPNFSVFLLTACLEAIEGNKSNKSQSRKQETIIIGSTLLSFGVLILCLAFIFYRRKRKQNARQMKQNQEARATSDHHDRDLELPLFDISTITSATNNFSTDNILGKGGFGSVYKGILEDGKEIAVKRLSQNSQQGLQEFKNEVMHVAKLQHRNLVKLLGCCIQAEERLLVYEFMPNKSLDFFIFDEKKGMLLDWPARLHIINGIARGLLYLHQDSRHRIIHRDLKAANVLLDDEMNPKISDFGLARSFGGNEAEANTQHVVGT 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1464g00002 686 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Stsc1464g00002 686 Pfam Protein kinase domain 522 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1464g00002 686 CDD B_lectin 15 137 IPR001480 -
Stsc1464g00002 686 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 676 - -
Stsc1464g00002 686 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 597 686 - -
Stsc1464g00002 686 SMART blect_4 13 137 IPR001480 -
Stsc1464g00002 686 Coils Coil 476 496 - -
Stsc1464g00002 686 ProSiteProfiles Bulb-type lectin domain profile. 7 130 IPR001480 -
Stsc1464g00002 686 Gene3D Phosphorylase Kinase; domain 1 494 596 - -
Stsc1464g00002 686 ProSiteProfiles Protein kinase domain profile. 521 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1464g00002 686 Pfam D-mannose binding lectin 55 163 IPR001480 -
Stsc1464g00002 686 Gene3D Hepatocyte Growth Factor 318 399 - -
Stsc1464g00002 686 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 596 - -
Stsc1464g00002 686 Pfam S-locus glycoprotein domain 195 299 IPR000858 GO:0048544
Stsc1464g00002 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Stsc1464g00002 686 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 168 IPR036426 -
Stsc1464g00002 686 Pfam PAN-like domain 322 387 IPR003609 -
Stsc1464g00002 686 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 134 - -
Stsc1464g00002 686 CDD PAN_AP_plant 318 402 - -
Stsc1464g00002 686 ProSiteProfiles PAN/Apple domain profile. 322 402 IPR003609 -
Stsc1464g00002 686 Gene3D Transferase(Phosphotransferase) domain 1 597 686 - -
Stsc1464g00002 686 SMART serkin_6 521 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1464g00002 686 SUPERFAMILY Protein kinase-like (PK-like) 503 686 IPR011009 -
Stsc1464g00002 686 Gene3D - 3 134 IPR036426 -
Stsc1464g00002 686 SMART ntp_6 322 401 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1464g00002 Stsc-Chr1464 1451 3950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1464g00002 466 686 Receptor kinase-like Gene Family AT4G23190 54.299 3.85e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc1464g00002 Pkinase 7.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1464g00002 - - adu:107462372 935.636