LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc1456g00001	ATGAGTTCCTTCTACTTGTTCCTTCTGCTTCCAACTTTCTTCTTCCTCCCCATTAACTGCTTTAACATCATCCAAGCTGCTACCCATCAAAATCCTATAGCTTTTTATAACTGCACAATCAACGCCACTTTTGCTTCCAATAGCACATACCGTTCCAACACCATAACACTCCTAAATTGGCTCTCCTCCAATGCCACTACACATCCCAGAGCATACAATACCACAGTAGTTGGCAAAAGCACTGCAGACACAGTTTATGGCATCCACTTTTGTATAAGAGACATCACACCAGGAATATGCCAAACCTGTGTGGAAGAAGCTTCCAAACTCATATCATCTCTTTGTAACACAGCAAAAGAAGCTATAATTTGGTACGGCGTATGCTTTGTGCGTTACTCTGATCGTCATTTCTTCTCCAATGTGGAGGAAACTCCAAGTCTCACCTTTGTGAGTGATGTGAACTATGTGGGTCAAGTTGGGCGCTACAACACTATCCTCTGGAATATGCTGAATGATATGAGAACTATAGCTGCTGGTGATTCAAATAAATTGTCTGCAATGACGCAGAAGATCACAGATCACCAAAACCTCTATGGTTCCGCTTGGTGTCTCCCGTATCTTTCCACTGAGAACTGCAGCTGGTGTCTCAGTGATGCCATTGCATATATTCCAGCAGGTTGCTGCAGGGGAAAATCTGGAGGATATGTATTGTATCCTAGCTGTGGTATTAGATACGAATTATATCCATTCCTTAAGGAACATATAGATCCTCTGGCTCCGCCGTCACCACCACCACACACAGATTCTCGTTCACCACCACCACACAGAGATTATCTTCCTTCGGCTCCACCAGTTGGGAATGATATTGGCACTTTGGAGTCCTTGCGATTTGAATTAGCCCTGATTGAAGCTGCAACAAATAGATTTGCGACAGAGAACAAGGTAGGCCAAGGCGGATTTGGGGAAGTCTATAAGGGTATTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGGCTTACTAGAAGCTCTGGACAAGGTGTCATAGAGTTTAAAAATGAGGTTCTTGTTATAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTACTGGGATTTTGTTTGGAAGATGAAGAAAAGATACTCATCTATGAGTATGTTCCAAACAAAAGTCTTGACTACTTTCTATGCGATCCACAAAAGCGAAGGGAATTATCTTGGTTTCAACGTAAACAAATCATCACAGGAATCGCTAGAGGAATTCTATACCTACATGAAGATTCTCGCCTCAAAATAATACATCGTGATCTAAAACCTAGTAACGTTTTGTTAGATAGTAATATGAATCCAAAAATATCTGATTTTGGTATGGCTAGAATTGTTGCTGTGGATCAAAATGAAGAAAGCACGCATAGAATAGTAGGGACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTCTCTGTGAAATCGGATGTGTTTAGTTTCGGAGTCATGGTTCTAGAGATTATTAACGGGAAGCAGAAAGGCAACTGCTCTTCTGAATCAGAGAGCATTGATGATATCCGGAAACATGTTGCAGGCTTGGGAAAAATGGACAGAGAAAACGCCACTGGAACTACTGGATCCTAA	1635	0.4147	MSSFYLFLLLPTFFFLPINCFNIIQAATHQNPIAFYNCTINATFASNSTYRSNTITLLNWLSSNATTHPRAYNTTVVGKSTADTVYGIHFCIRDITPGICQTCVEEASKLISSLCNTAKEAIIWYGVCFVRYSDRHFFSNVEETPSLTFVSDVNYVGQVGRYNTILWNMLNDMRTIAAGDSNKLSAMTQKITDHQNLYGSAWCLPYLSTENCSWCLSDAIAYIPAGCCRGKSGGYVLYPSCGIRYELYPFLKEHIDPLAPPSPPPHTDSRSPPPHRDYLPSAPPVGNDIGTLESLRFELALIEAATNRFATENKVGQGGFGEVYKGILSDGQEIAVKRLTRSSGQGVIEFKNEVLVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLCDPQKRRELSWFQRKQIITGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAVDQNEESTHRIVGTYGYMSPEYAMFGQFSVKSDVFSFGVMVLEIINGKQKGNCSSESESIDDIRKHVAGLGKMDRENATGTTGS	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc1456g00001	544	MobiDBLite	consensus disorder prediction	258	284	-	-
	Stsc1456g00001	544	Gene3D	Phosphorylase Kinase; domain 1	286	384	-	-
	Stsc1456g00001	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	430	442	IPR008271	GO:0004672\|GO:0006468
	Stsc1456g00001	544	SUPERFAMILY	Protein kinase-like (PK-like)	291	518	IPR011009	-
	Stsc1456g00001	544	ProSitePatterns	Protein kinases ATP-binding region signature.	315	337	IPR017441	GO:0005524
	Stsc1456g00001	544	Gene3D	Transferase(Phosphotransferase) domain 1	385	538	-	-
	Stsc1456g00001	544	SMART	serkin_6	309	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1456g00001	544	ProSiteProfiles	Gnk2-homologous domain profile.	143	250	IPR002902	-
	Stsc1456g00001	544	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	385	476	-	-
	Stsc1456g00001	544	Pfam	Salt stress response/antifungal	157	248	IPR002902	-
	Stsc1456g00001	544	Pfam	Salt stress response/antifungal	38	134	IPR002902	-
	Stsc1456g00001	544	Gene3D	-	31	137	IPR038408	-
	Stsc1456g00001	544	Gene3D	-	147	250	IPR038408	-
	Stsc1456g00001	544	ProSiteProfiles	Protein kinase domain profile.	309	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1456g00001	544	ProSiteProfiles	Gnk2-homologous domain profile.	32	137	IPR002902	-
	Stsc1456g00001	544	Pfam	Protein kinase domain	310	518	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1456g00001	544	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	275	384	-	-
	Stsc1456g00001	544	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	128	512	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc1456g00001	Stsc-Chr1456	8052	11379	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc1456g00001	21	530	Receptor kinase-like Gene Family	AT4G05200	43.580	1.04e-146	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc1456g00001		Pkinase	4.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc1456g00001	-		-	lja:Lj5g3v2060950.1	690.263